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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263485   splicing factor U2af large subunit B 
 sly-r.6   101263485   splicing factor U2af large subunit B 
 sly-u.5   101251944   splicing factor U2af large subunit A 
 sly-u.5   101266099   splicing factor U2af large subunit B 
 ath-u.5   ATU2AF65A   U2 snRNP auxilliary factor, large subunit, splicing factor 
 ath-u.5   AT1G60900   U2 snRNP auxilliary factor, large subunit, splicing factor 
 gma-u.5   100793801   splicing factor U2af large subunit B 
 gma-u.5   100779915   splicing factor U2af large subunit B 
 vvi-u.5   100243034   splicing factor U2af large subunit B 
 vvi-u.5   100241076   splicing factor U2af large subunit B 
 ppo-u.5   18103001   splicing factor U2af large subunit A 
 ppo-u.5   18099301   splicing factor U2af large subunit B 
 ppo-u.5   7456807   splicing factor U2af large subunit A 
 mtr-u.5   11405354   splicing factor U2af large subunit B 
 mtr-u.5   11429844   splicing factor U2af large subunit A 
 mtr-u.5   11434844   splicing factor U2af large subunit A 
 osa-u.5   4350981   splicing factor U2af large subunit A-like 
 osa-u.5   4351124   splicing factor U2af large subunit B-like 
 zma-u.5   100286059   uncharacterized LOC100286059 
 zma-u.5   100272843   Splicing factor U2af large subunit A 
 zma-u.5   100192903   Splicing factor U2AF subunit 

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Top 50 coexpressed genes to 101263485 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263485 (sly-u.5 coexpression data)

CoexMap"101263485"


slyLOC101263485 | Entrez gene ID : 101263485      
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 2 2 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0006397 [list] [network] mRNA processing  (211 genes)  IEA  
GO CC
GO:0089701 [list] [network] U2AF complex  (7 genes)  IEA  
GO:0000243 [list] [network] commitment complex  (11 genes)  IEA  
GO:0016607 [list] [network] nuclear speck  (15 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (19 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (9 genes)  IEA  
GO:0008187 [list] [network] poly-pyrimidine tract binding  (10 genes)  IEA  
Protein XP_004233511.1 [sequence] [blastp]
XP_010317204.1 [sequence] [blastp]
XP_010317205.1 [sequence] [blastp]
XP_069149468.1 [sequence] [blastp]
XP_069149469.1 [sequence] [blastp]
XP_069149470.1 [sequence] [blastp]
XP_069149471.1 [sequence] [blastp]
XP_069149472.1 [sequence] [blastp]
XP_069149473.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_004233511.1)
nucl 10  (predict for XP_010317204.1)
chlo 9  (predict for XP_010317205.1)
chlo 9  (predict for XP_069149468.1)
chlo 9  (predict for XP_069149469.1)
chlo 9  (predict for XP_069149470.1)
chlo 9  (predict for XP_069149471.1)
chlo 9  (predict for XP_069149472.1)
chlo 9  (predict for XP_069149473.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_004233511.1)
other 7,  chlo 4  (predict for XP_010317204.1)
mito 5  (predict for XP_010317205.1)
mito 5  (predict for XP_069149468.1)
mito 5  (predict for XP_069149469.1)
mito 5  (predict for XP_069149470.1)
mito 5  (predict for XP_069149471.1)
mito 5  (predict for XP_069149472.1)
mito 5  (predict for XP_069149473.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263485
sly-r.6
for
101263485
sly-u.5
for
101251944
sly-u.5
for
101266099
ath-u.5
for
ATU2AF65A
ath-u.5
for
AT1G60900
gma-u.5
for
100793801
gma-u.5
for
100779915
vvi-u.5
for
100243034
vvi-u.5
for
100241076
ppo-u.5
for
18103001
ppo-u.5
for
18099301
ppo-u.5
for
7456807
mtr-u.5
for
11405354
mtr-u.5
for
11429844
mtr-u.5
for
11434844
osa-u.5
for
4350981
osa-u.5
for
4351124
zma-u.5
for
100286059
zma-u.5
for
100272843
zma-u.5
for
100192903


Ortholog ID: 1939
Species sly sly sot sot nta nta ath ath gma gma bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC101251944 LOC101263485 LOC102584094 LOC102584606 LOC107809029 LOC107771978 ATU2AF65A AT1G60900 LOC100779915 LOC100793801 LOC103838474 LOC100243034 LOC100241076 LOC7473154 LOC7456807 LOC11405354 LOC11434844 LOC107904274 LOC107926667 LOC106389813 LOC106402377 LOC102609244 LOC102618278 LOC4350981 LOC4351124 LOC100286059 LOC100192903 LOC123086149 LOC123116879 LOC123452022 LOC123448521 LOC110435658 LOC8070230 LOC100821343 LOC100820960 CHLRE_09g391949v5
Function* splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit B-like splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit A U2 snRNP auxilliary factor, large subunit, splicing factor U2 snRNP auxilliary factor, large subunit, splicing factor splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit B splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit A-like splicing factor U2af large subunit B-like uncharacterized LOC100286059 Splicing factor U2AF subunit splicing factor U2af large subunit A splicing factor U2af large subunit A-like splicing factor U2af large subunit A-like splicing factor U2af large subunit A-like splicing factor U2af large subunit A splicing factor U2af large subunit B splicing factor U2af large subunit A splicing factor U2af large subunit B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 4
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
ppo00514 Other types of O-glycan biosynthesis 2
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 14
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 8
mtr03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101251944 101263485 102584094 102584606 107809029 107771978 829822 842382 100779915 100793801 103838474 100243034 100241076 7473154 7456807 11405354 11434844 107904274 107926667 106389813 106402377 102609244 102618278 4350981 4351124 100286059 100192903 123086149 123116879 123452022 123448521 110435658 8070230 100821343 100820960 5720239
The preparation time of this page was 3.6 [sec].