ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125574999	splicing factor U2af large subunit A-like
bna-r.1	106430390	splicing factor U2af large subunit B
bna-r.1	106361438	splicing factor U2af large subunit A-like
bna-r.1	106389813	splicing factor U2af large subunit A
bra-r.6	103838474	splicing factor U2af large subunit B
bra-r.6	103830142	splicing factor U2af large subunit B
bra-r.6	117128294	splicing factor U2af large subunit B-like
ath-u.5	ATU2AF65A	U2 snRNP auxilliary factor, large subunit, splicing factor
ath-u.5	AT1G60900	U2 snRNP auxilliary factor, large subunit, splicing factor
ghi-r.1	107926667	splicing factor U2af large subunit B
ghi-r.1	107904274	splicing factor U2af large subunit B
ghi-r.1	107957409	splicing factor U2af large subunit B
cit-r.1	102618278	splicing factor U2af large subunit B
cit-r.1	102609244	splicing factor U2af large subunit A
gma-u.5	100793801	splicing factor U2af large subunit B
gma-u.5	100779915	splicing factor U2af large subunit B
vvi-u.5	100243034	splicing factor U2af large subunit B
vvi-u.5	100241076	splicing factor U2af large subunit B
ppo-u.5	18103001	splicing factor U2af large subunit A
ppo-u.5	7473154	splicing factor U2af large subunit B
ppo-u.5	7456807	splicing factor U2af large subunit A
mtr-u.5	11434844	splicing factor U2af large subunit A
mtr-u.5	11429844	splicing factor U2af large subunit A
mtr-u.5	11405354	splicing factor U2af large subunit B
sly-u.5	101266099	splicing factor U2af large subunit B
sly-u.5	101251944	splicing factor U2af large subunit A
sly-u.5	101263485	splicing factor U2af large subunit B
sot-r.1	102584606	splicing factor U2af large subunit B
sot-r.1	102584094	splicing factor U2af large subunit B-like
sot-r.1	102585125	splicing factor U2af large subunit A
nta-r.1	107764823	splicing factor U2af large subunit B
nta-r.1	107771978	splicing factor U2af large subunit A
nta-r.1	107774338	splicing factor U2af large subunit B
osa-u.5	4351124	splicing factor U2af large subunit B-like
osa-u.5	4350981	splicing factor U2af large subunit A-like
zma-u.5	100192903	Splicing factor U2AF subunit
zma-u.5	100272843	Splicing factor U2af large subunit A
zma-u.5	100286059	uncharacterized LOC100286059
tae-r.2	123086232	splicing factor U2af large subunit B-like
tae-r.2	123086149	splicing factor U2af large subunit A
tae-r.2	123091820	splicing factor U2af large subunit A
hvu-r.1	123448306	splicing factor U2af large subunit B
hvu-r.1	123452022	splicing factor U2af large subunit A-like
hvu-r.1	123448521	splicing factor U2af large subunit A-like
sbi-r.1	8070230	splicing factor U2af large subunit B
sbi-r.1	8070235	splicing factor U2af large subunit B
sbi-r.1	110435658	splicing factor U2af large subunit A
bdi-r.1	100821747	splicing factor U2af large subunit B
bdi-r.1	100821343	splicing factor U2af large subunit A
bdi-r.1	100820960	splicing factor U2af large subunit B
cre-r.1	CHLRE_09g391949v5	uncharacterized protein

Top 50 coexpressed genes to 125574999 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125574999 (bna-r.1 coexpression data)

CoexMap"125574999"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03040 [list] [network] Spliceosome (912 genes)

GO BP

GO:0006397 [list] [network] mRNA processing

(684 genes)

IEA

GO CC

GO:0089701 [list] [network] U2AF complex	(21 genes)	IEA
GO:0000243 [list] [network] commitment complex	(31 genes)	IEA
GO:0016607 [list] [network] nuclear speck	(47 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(106 genes)	IEA
GO:0005634 [list] [network] nucleus	(9971 genes)	IEA

GO MF

GO:0008187 [list] [network] poly-pyrimidine tract binding	(27 genes)	IEA
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding	(30 genes)	IEA

Protein

XP_048607303.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_048607303.1)

Subcellular
localization
TargetP

other 8

(predict for XP_048607303.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125574999	bna-r.1 for 106430390	bna-r.1 for 106361438	bna-r.1 for 106389813	bra-r.6 for 103838474	bra-r.6 for 103830142	bra-r.6 for 117128294	ath-u.5 for ATU2AF65A	ath-u.5 for AT1G60900	ghi-r.1 for 107926667	ghi-r.1 for 107904274	ghi-r.1 for 107957409	cit-r.1 for 102618278	cit-r.1 for 102609244	gma-u.5 for 100793801	gma-u.5 for 100779915	vvi-u.5 for 100243034	vvi-u.5 for 100241076	ppo-u.5 for 18103001	ppo-u.5 for 7473154	ppo-u.5 for 7456807	mtr-u.5 for 11434844	mtr-u.5 for 11429844	mtr-u.5 for 11405354	sly-u.5 for 101266099	sly-u.5 for 101251944	sly-u.5 for 101263485	sot-r.1 for 102584606	sot-r.1 for 102584094	sot-r.1 for 102585125	nta-r.1 for 107764823	nta-r.1 for 107771978	nta-r.1 for 107774338	osa-u.5 for 4351124	osa-u.5 for 4350981	zma-u.5 for 100192903	zma-u.5 for 100272843	zma-u.5 for 100286059	tae-r.2 for 123086232	tae-r.2 for 123086149	tae-r.2 for 123091820	hvu-r.1 for 123448306	hvu-r.1 for 123452022	hvu-r.1 for 123448521	sbi-r.1 for 8070230	sbi-r.1 for 8070235	sbi-r.1 for 110435658	bdi-r.1 for 100821747	bdi-r.1 for 100821343	bdi-r.1 for 100820960	cre-r.1 for CHLRE_09g391949v5

Ortholog

Ortholog ID: 1939

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

splicing factor U2af large subunit A-like

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit B-like

U2 snRNP auxilliary factor, large subunit, splicing factor

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit B-like

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit B-like

splicing factor U2af large subunit A-like

Splicing factor U2AF subunit

Splicing factor U2af large subunit A

uncharacterized LOC100286059

splicing factor U2af large subunit A

splicing factor U2af large subunit A-like

splicing factor U2af large subunit B

splicing factor U2af large subunit A-like

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

splicing factor U2af large subunit A

splicing factor U2af large subunit B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00410	beta-Alanine metabolism	2
ghi00640	Propanoate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00410	beta-Alanine metabolism	2
ghi00640	Propanoate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03013	Nucleocytoplasmic transport	3
cit03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	8
gma03015	mRNA surveillance pathway	2
gma03082	ATP-dependent chromatin remodeling	2
gma03083	Polycomb repressive complex	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	8
gma03015	mRNA surveillance pathway	4
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	8
ppo00514	Other types of O-glycan biosynthesis	2
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8
mtr03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	11
mtr03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	14
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00562	Inositol phosphate metabolism	2
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	9

Expression

Expression pattern

Entrez Gene ID^*

125574999

106389813

106402377

103838474

117128294

829822

842382

107926667

107904274

107957409

102618278

102609244

100793801

100779915

100243034

100241076

7473154

7456807

18099301

11434844

11429844

11405354

101266099

101251944

101263485

102584606

102584094

102585125

107764823

107771978

107809029

4351124

4350981

100192903

100272843

100286059

123086149

123091820

123116879

123448306

123452022

123448521

8070230

8070235

110435658

100821747

100821343

100820960

5720239

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	2	2	2	3	3	3	3	3	2	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125574999 (bna-r.1 coexpression data)

Top 50 enrichment test to 125574999 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**