ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102618278	splicing factor U2af large subunit B
cit-r.1	102609244	splicing factor U2af large subunit A
ath-u.5	ATU2AF65A	U2 snRNP auxilliary factor, large subunit, splicing factor
ath-u.5	AT1G60900	U2 snRNP auxilliary factor, large subunit, splicing factor
bra-r.6	117128294	splicing factor U2af large subunit B-like
bra-r.6	103834995	splicing factor U2af large subunit A
ghi-r.1	107904217	splicing factor U2af large subunit B
ghi-r.1	107926667	splicing factor U2af large subunit B
ghi-r.1	107945661	splicing factor U2af large subunit B
bna-r.1	125574999	splicing factor U2af large subunit A-like
bna-r.1	125600250	splicing factor U2af large subunit A-like
bna-r.1	106389813	splicing factor U2af large subunit A
gma-u.5	100793801	splicing factor U2af large subunit B
gma-u.5	100779915	splicing factor U2af large subunit B
vvi-u.5	100243034	splicing factor U2af large subunit B
vvi-u.5	100241076	splicing factor U2af large subunit B
ppo-u.5	18103001	splicing factor U2af large subunit A
ppo-u.5	18099301	splicing factor U2af large subunit B
ppo-u.5	7456807	splicing factor U2af large subunit A
mtr-u.5	11405354	splicing factor U2af large subunit B
mtr-u.5	11429844	splicing factor U2af large subunit A
mtr-u.5	11434844	splicing factor U2af large subunit A
sly-u.5	101251944	splicing factor U2af large subunit A
sly-u.5	101263485	splicing factor U2af large subunit B
sly-u.5	101266099	splicing factor U2af large subunit B
sot-r.1	102584094	splicing factor U2af large subunit B-like
sot-r.1	102584606	splicing factor U2af large subunit B
sot-r.1	102585125	splicing factor U2af large subunit A
nta-r.1	107774338	splicing factor U2af large subunit B
nta-r.1	107781213	splicing factor U2af large subunit B-like
nta-r.1	107790528	splicing factor U2af large subunit B
osa-u.5	4350981	splicing factor U2af large subunit A-like
osa-u.5	4351124	splicing factor U2af large subunit B-like
zma-u.5	100286059	uncharacterized LOC100286059
zma-u.5	100192903	Splicing factor U2AF subunit
zma-u.5	100272843	Splicing factor U2af large subunit A
tae-r.2	123086149	splicing factor U2af large subunit A
tae-r.2	123116879	splicing factor U2af large subunit A-like
tae-r.2	123086232	splicing factor U2af large subunit B-like
hvu-r.1	123452022	splicing factor U2af large subunit A-like
hvu-r.1	123448521	splicing factor U2af large subunit A-like
hvu-r.1	123448306	splicing factor U2af large subunit B
sbi-r.1	8070230	splicing factor U2af large subunit B
sbi-r.1	8070235	splicing factor U2af large subunit B
sbi-r.1	110435658	splicing factor U2af large subunit A
bdi-r.1	100821747	splicing factor U2af large subunit B
bdi-r.1	100821343	splicing factor U2af large subunit A
bdi-r.1	100820960	splicing factor U2af large subunit B
cre-r.1	CHLRE_09g391949v5	uncharacterized protein

Top 50 coexpressed genes to 102618278 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102618278 (cit-r.1 coexpression data)

CoexMap"102618278"

[Cytoscape]

Annotation

functional annotation

KEGG

cit03040 [list] [network] Spliceosome (220 genes)

GO BP

GO:0006397 [list] [network] mRNA processing

(202 genes)

IEA

GO CC

GO:0000243 [list] [network] commitment complex	(7 genes)	IEA
GO:0089701 [list] [network] U2AF complex	(12 genes)	IEA
GO:0016607 [list] [network] nuclear speck	(13 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(17 genes)	IEA
GO:0005634 [list] [network] nucleus	(2569 genes)	IEA

GO MF

GO:0008187 [list] [network] poly-pyrimidine tract binding	(5 genes)	IEA
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding	(13 genes)	IEA

Protein

XP_006466763.1 [sequence] [blastp]
XP_015381105.1 [sequence] [blastp]
XP_024952359.1 [sequence] [blastp]
XP_024952362.1 [sequence] [blastp]
XP_024952363.1 [sequence] [blastp]
XP_024952365.1 [sequence] [blastp]
XP_052300347.1 [sequence] [blastp]
XP_052300348.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_006466763.1)
nucl 9	(predict for XP_015381105.1)
chlo 6, cyto 3	(predict for XP_024952359.1)
chlo 6, cyto 3	(predict for XP_024952362.1)
chlo 9	(predict for XP_024952363.1)
chlo 9	(predict for XP_024952365.1)
nucl 9	(predict for XP_052300347.1)
chlo 6, cyto 3	(predict for XP_052300348.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006466763.1)
other 8	(predict for XP_015381105.1)
other 4, chlo 3	(predict for XP_024952359.1)
other 4, chlo 4	(predict for XP_024952362.1)
other 4	(predict for XP_024952363.1)
other 4	(predict for XP_024952365.1)
other 8	(predict for XP_052300347.1)
other 4, chlo 3	(predict for XP_052300348.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102618278	cit-r.1 for 102609244	ath-u.5 for ATU2AF65A	ath-u.5 for AT1G60900	bra-r.6 for 117128294	bra-r.6 for 103834995	ghi-r.1 for 107904217	ghi-r.1 for 107926667	ghi-r.1 for 107945661	bna-r.1 for 125574999	bna-r.1 for 125600250	bna-r.1 for 106389813	gma-u.5 for 100793801	gma-u.5 for 100779915	vvi-u.5 for 100243034	vvi-u.5 for 100241076	ppo-u.5 for 18103001	ppo-u.5 for 18099301	ppo-u.5 for 7456807	mtr-u.5 for 11405354	mtr-u.5 for 11429844	mtr-u.5 for 11434844	sly-u.5 for 101251944	sly-u.5 for 101263485	sly-u.5 for 101266099	sot-r.1 for 102584094	sot-r.1 for 102584606	sot-r.1 for 102585125	nta-r.1 for 107774338	nta-r.1 for 107781213	nta-r.1 for 107790528	osa-u.5 for 4350981	osa-u.5 for 4351124	zma-u.5 for 100286059	zma-u.5 for 100192903	zma-u.5 for 100272843	tae-r.2 for 123086149	tae-r.2 for 123116879	tae-r.2 for 123086232	hvu-r.1 for 123452022	hvu-r.1 for 123448521	hvu-r.1 for 123448306	sbi-r.1 for 8070230	sbi-r.1 for 8070235	sbi-r.1 for 110435658	bdi-r.1 for 100821747	bdi-r.1 for 100821343	bdi-r.1 for 100820960	cre-r.1 for CHLRE_09g391949v5

Ortholog

Ortholog ID: 1939

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

splicing factor U2af large subunit B