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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268166   pentatricopeptide repeat-containing protein At5g55840 
 sly-r.6   101268166   pentatricopeptide repeat-containing protein At5g55840 
 ath-u.5   AT5G55840   PPR superfamily protein 
 gma-u.5   100817407   pentatricopeptide repeat-containing protein At5g55840 
 vvi-u.5   104882717   pentatricopeptide repeat-containing protein At5g55840 
 ppo-u.5   7487550   pentatricopeptide repeat-containing protein At5g55840 
 mtr-u.5   11437641   pentatricopeptide repeat-containing protein At5g55840 
 osa-u.5   107280481   pentatricopeptide repeat-containing protein At5g55840 
 zma-u.5   103643672   uncharacterized LOC103643672 

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Top 50 coexpressed genes to 101268166 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268166 (sly-u.5 coexpression data)

CoexMap"101268166"


slyLOC101268166 | Entrez gene ID : 101268166    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004252127.1 [sequence] [blastp]
XP_010313941.1 [sequence] [blastp]
XP_010313942.1 [sequence] [blastp]
XP_010313945.1 [sequence] [blastp]
XP_010313947.1 [sequence] [blastp]
XP_019067143.1 [sequence] [blastp]
XP_019067144.1 [sequence] [blastp]
XP_025884261.1 [sequence] [blastp]
XP_025884263.1 [sequence] [blastp]
XP_069148418.1 [sequence] [blastp]
XP_069148419.1 [sequence] [blastp]
XP_069148420.1 [sequence] [blastp]
XP_069148421.1 [sequence] [blastp]
XP_069148422.1 [sequence] [blastp]
XP_069148423.1 [sequence] [blastp]
XP_069148424.1 [sequence] [blastp]
XP_069148425.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_004252127.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_010313941.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_010313942.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_010313945.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_010313947.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_019067143.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_019067144.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_025884261.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_025884263.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148418.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148419.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148420.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148421.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148422.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148423.1)
chlo 3,  cyto 3,  nucl 2,  mito 2  (predict for XP_069148424.1)
chlo 5,  cyto 4,  nucl 1  (predict for XP_069148425.1)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_004252127.1)
chlo 5,  mito 3  (predict for XP_010313941.1)
chlo 5,  mito 3  (predict for XP_010313942.1)
chlo 5,  mito 3  (predict for XP_010313945.1)
chlo 5,  mito 3  (predict for XP_010313947.1)
chlo 5,  mito 3  (predict for XP_019067143.1)
chlo 5,  mito 3  (predict for XP_019067144.1)
chlo 5,  mito 3  (predict for XP_025884261.1)
chlo 5,  mito 3  (predict for XP_025884263.1)
chlo 5,  mito 3  (predict for XP_069148418.1)
chlo 5,  mito 3  (predict for XP_069148419.1)
chlo 5,  mito 3  (predict for XP_069148420.1)
chlo 5,  mito 3  (predict for XP_069148421.1)
chlo 5,  mito 3  (predict for XP_069148422.1)
chlo 5,  mito 3  (predict for XP_069148423.1)
chlo 5,  mito 3  (predict for XP_069148424.1)
mito 8  (predict for XP_069148425.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268166

.
sly-r.6
for
101268166

.
ath-u.5
for
AT5G55840

.
gma-u.5
for
100817407

.
vvi-u.5
for
104882717

.
ppo-u.5
for
7487550

.
mtr-u.5
for
11437641

.
osa-u.5
for
107280481

.
zma-u.5
for
103643672

.


Ortholog ID: 11763
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G55840 LOC100817407 LOC101268166 LOC107280481 LOC103643672 LOC103845025 LOC104882717 LOC7487550 LOC11437641 LOC123086864 LOC123096116 LOC123447767 LOC107922042 LOC121206183 LOC106447643 LOC106397311 LOC8062534 LOC102597184 LOC102628623 LOC100843511 LOC107776107 LOC107785145
Function* PPR superfamily protein pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 uncharacterized LOC103643672 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840-like pentatricopeptide repeat-containing protein At5g55840-like uncharacterized LOC8062534 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 pentatricopeptide repeat-containing protein At5g55840 uncharacterized LOC107776107 uncharacterized LOC107785145
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835678 100817407 101268166 107280481 103643672 103845025 104882717 7487550 11437641 123086864 123096116 123447767 107922042 121206183 106447643 106397311 8062534 102597184 102628623 100843511 107776107 107785145
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