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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   AMYA1   alpha-amylase 
 sly-u.5   101250886   probable alpha-amylase 2 
 nta-r.1   107780204   putative alpha-amylase 2 
 ath-u.5   AMY2   alpha-amylase-like 2 
 gma-u.5   100813490   alpha-amylase-like 
 gma-u.5   100793671   probable alpha-amylase 2 
 bra-r.6   103832061   probable alpha-amylase 2 
 vvi-u.5   100257481   probable alpha-amylase 2 
 ppo-u.5   7496889   probable alpha-amylase 2 
 mtr-u.5   11412615   probable alpha-amylase 2 
 ghi-r.1   107957617   probable alpha-amylase 2 
 ghi-r.1   107938137   probable alpha-amylase 2 
 ghi-r.1   107904981   probable alpha-amylase 2 
 bna-r.1   106421656   probable alpha-amylase 2 
 bna-r.1   106405826   probable alpha-amylase 2 
 cit-r.1   102625798   probable alpha-amylase 2 
 osa-u.5   4335737   probable alpha-amylase 2 
 zma-u.5   100273593   uncharacterized LOC100273593 
 tae-r.2   123053198   probable alpha-amylase 2 
 tae-r.2   123045358   probable alpha-amylase 2 
 tae-r.2   123189113   probable alpha-amylase 2 
 hvu-r.1   123426601   probable alpha-amylase 2 
 sbi-r.1   8072062   probable alpha-amylase 2 
 bdi-r.1   100824346   probable alpha-amylase 2 
 cre-r.1   CHLRE_08g362450v5   uncharacterized protein 

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Top 50 coexpressed genes to AMYA1 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AMYA1 (sot-r.1 coexpression data)

CoexMap"102577485"


sotAMYA1 | Entrez gene ID : 102577485      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 1 1 2 1 1 1 1 3 2 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00500 [list] [network] Starch and sucrose metabolism (150 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (739 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (5 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (256 genes)  IEA  
Protein NP_001274982.1 [sequence] [blastp]
XP_006342097.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cysk_nucl 3  (predict for NP_001274982.1)
cyto 5,  nucl 4,  extr 1,  pero 1  (predict for XP_006342097.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001274982.1)
other 8  (predict for XP_006342097.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
AMYA1
sly-u.5
for
101250886
nta-r.1
for
107780204
ath-u.5
for
AMY2
gma-u.5
for
100813490
gma-u.5
for
100793671
bra-r.6
for
103832061
vvi-u.5
for
100257481
ppo-u.5
for
7496889
mtr-u.5
for
11412615
ghi-r.1
for
107957617
ghi-r.1
for
107938137
ghi-r.1
for
107904981
bna-r.1
for
106421656
bna-r.1
for
106405826
cit-r.1
for
102625798
osa-u.5
for
4335737
zma-u.5
for
100273593
tae-r.2
for
123053198
tae-r.2
for
123045358
tae-r.2
for
123189113
hvu-r.1
for
123426601
sbi-r.1
for
8072062
bdi-r.1
for
100824346
cre-r.1
for
CHLRE_08g362450v5


Ortholog ID: 10556
Species sot sly nta ath gma gma bra vvi ppo mtr ghi ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol AMYA1 LOC101250886 LOC107780204 AMY2 LOC100813490 LOC100793671 LOC103832061 LOC100257481 LOC7496889 LOC11412615 LOC107957617 LOC107938137 LOC107904981 LOC106421656 LOC106405826 LOC102625798 LOC4335737 LOC100273593 LOC123053198 LOC123045358 LOC123189113 LOC123426601 LOC8072062 LOC100824346 CHLRE_08g362450v5
Function* alpha-amylase probable alpha-amylase 2 putative alpha-amylase 2 alpha-amylase-like 2 alpha-amylase-like probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized LOC100273593 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 6
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00564 Glycerophospholipid metabolism 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00600 Sphingolipid metabolism 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 7
cre01230 Biosynthesis of amino acids 5
cre00500 Starch and sucrose metabolism 5
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102577485 101250886 107780204 843945 100813490 100793671 103832061 100257481 7496889 11412615 107957617 107938137 107904981 106421656 106405826 102625798 4335737 100273593 123053198 123045358 123189113 123426601 8072062 100824346 5721598
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