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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106405826   probable alpha-amylase 2 
 bna-r.1   106421656   probable alpha-amylase 2 
 bra-r.6   103832061   probable alpha-amylase 2 
 ath-u.5   AMY2   alpha-amylase-like 2 
 ghi-r.1   107938137   probable alpha-amylase 2 
 ghi-r.1   107904981   probable alpha-amylase 2 
 ghi-r.1   107957617   probable alpha-amylase 2 
 cit-r.1   102625798   probable alpha-amylase 2 
 gma-u.5   100813490   alpha-amylase-like 
 gma-u.5   100793671   probable alpha-amylase 2 
 vvi-u.5   100257481   probable alpha-amylase 2 
 ppo-u.5   7496889   probable alpha-amylase 2 
 mtr-u.5   11412615   probable alpha-amylase 2 
 sly-u.5   101250886   probable alpha-amylase 2 
 sot-r.1   AMYA1   alpha-amylase 
 nta-r.1   107780204   putative alpha-amylase 2 
 osa-u.5   4335737   probable alpha-amylase 2 
 zma-u.5   100273593   uncharacterized LOC100273593 
 tae-r.2   123053198   probable alpha-amylase 2 
 tae-r.2   123045358   probable alpha-amylase 2 
 tae-r.2   123189113   probable alpha-amylase 2 
 hvu-r.1   123426601   probable alpha-amylase 2 
 sbi-r.1   8072062   probable alpha-amylase 2 
 bdi-r.1   100824346   probable alpha-amylase 2 
 cre-r.1   CHLRE_08g362450v5   uncharacterized protein 

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Top 50 coexpressed genes to 106405826 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106405826 (bna-r.1 coexpression data)

CoexMap""


bnaLOC106405826 | Entrez gene ID : 106405826    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 1 1 1 1 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
Function probable alpha-amylase 2
KEGG bna00500 [list] [network] Starch and sucrose metabolism (474 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (2192 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (6 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (766 genes)  IEA  
Protein XP_013701828.1 [sequence] [blastp]
XP_022561009.1 [sequence] [blastp]
XP_022561010.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 7,  nucl 3  (predict for XP_013701828.1)
cysk 7,  nucl 3  (predict for XP_022561009.1)
cysk 7,  nucl 3  (predict for XP_022561010.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013701828.1)
other 9  (predict for XP_022561009.1)
other 9  (predict for XP_022561010.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106405826
bna-r.1
for
106421656
bra-r.6
for
103832061
ath-u.5
for
AMY2
ghi-r.1
for
107938137
ghi-r.1
for
107904981
ghi-r.1
for
107957617
cit-r.1
for
102625798
gma-u.5
for
100813490
gma-u.5
for
100793671
vvi-u.5
for
100257481
ppo-u.5
for
7496889
mtr-u.5
for
11412615
sly-u.5
for
101250886
sot-r.1
for
AMYA1
nta-r.1
for
107780204
osa-u.5
for
4335737
zma-u.5
for
100273593
tae-r.2
for
123053198
tae-r.2
for
123045358
tae-r.2
for
123189113
hvu-r.1
for
123426601
sbi-r.1
for
8072062
bdi-r.1
for
100824346
cre-r.1
for
CHLRE_08g362450v5

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Ortholog ID: 10556
Species bna bna bra ath ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106405826 LOC106421656 LOC103832061 AMY2 LOC107938137 LOC107904981 LOC107957617 LOC102625798 LOC100813490 LOC100793671 LOC100257481 LOC7496889 LOC11412615 LOC101250886 AMYA1 LOC107780204 LOC4335737 LOC100273593 LOC123053198 LOC123045358 LOC123189113 LOC123426601 LOC8072062 LOC100824346 CHLRE_08g362450v5
Function* probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 alpha-amylase-like 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 alpha-amylase-like probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 alpha-amylase putative alpha-amylase 2 probable alpha-amylase 2 uncharacterized LOC100273593 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 6
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00564 Glycerophospholipid metabolism 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00600 Sphingolipid metabolism 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 7
cre01230 Biosynthesis of amino acids 5
cre00500 Starch and sucrose metabolism 5
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106405826 106421656 103832061 843945 107938137 107904981 107957617 102625798 100813490 100793671 100257481 7496889 11412615 101250886 102577485 107780204 4335737 100273593 123053198 123045358 123189113 123426601 8072062 100824346 5721598
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