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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102584565   pentatricopeptide repeat-containing protein At1g04840 
 sly-u.5   101246762   pentatricopeptide repeat-containing protein At1g04840 
 ath-u.5   AT1G04840   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100245116   pentatricopeptide repeat-containing protein At1g04840 
 ppo-u.5   7461658   pentatricopeptide repeat-containing protein At1g04840 

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Top 50 coexpressed genes to 102584565 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102584565 (sot-r.1 coexpression data)

CoexMap"102584565"


sotLOC102584565 | Entrez gene ID : 102584565    
Species sot sly ath vvi ppo sbi nta mtr osa cre cit bra hvu bdi zma tae bna ghi gma
Paralog 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (768 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006360955.1 [sequence] [blastp]
XP_006360956.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  E.R._vacu 1  (predict for XP_006360955.1)
cyto 6,  nucl 1,  chlo 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  E.R._vacu 1  (predict for XP_006360956.1)
Subcellular
localization
TargetP
other 4  (predict for XP_006360955.1)
other 4  (predict for XP_006360956.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102584565

.
sly-u.5
for
101246762

.
ath-u.5
for
AT1G04840

.
vvi-u.5
for
100245116

.
ppo-u.5
for
7461658

.


Ortholog ID: 14061
Species ath sly vvi ppo ghi ghi sot cit nta nta
Symbol AT1G04840 LOC101246762 LOC100245116 LOC7461658 LOC107936089 LOC107934426 LOC102584565 LOC102616932 LOC107786336 LOC107800995
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840-like pentatricopeptide repeat-containing protein At1g04840-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839402 101246762 100245116 7461658 107936089 107934426 102584565 102616932 107786336 107800995
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