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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102589060   histidine--tRNA ligase, cytoplasmic 
 sly-u.5   101251038   histidine--tRNA ligase, cytoplasmic 
 ath-u.5   AT3G02760   Class II aaRS and biotin synthetases superfamily protein 
 gma-u.5   100809535   histidine--tRNA ligase, cytoplasmic 
 gma-u.5   100777684   histidine--tRNA ligase, cytoplasmic 
 vvi-u.5   100241489   histidine--tRNA ligase, cytoplasmic 
 ppo-u.5   7455249   histidine--tRNA ligase, cytoplasmic 
 mtr-u.5   25483747   histidine--tRNA ligase, cytoplasmic 
 osa-u.5   4337830   histidine--tRNA ligase, cytoplasmic-like 
 zma-u.5   103635898   histidine--tRNA ligase, cytoplasmic 
 zma-u.5   100279212   uncharacterized LOC100279212 

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Top 50 coexpressed genes to 102589060 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102589060 (sot-r.1 coexpression data)

CoexMap"102589060"


sotLOC102589060 | Entrez gene ID : 102589060      
Species sot sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi tae bna ghi
Paralog 1 1 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00970 [list] [network] Aminoacyl-tRNA biosynthesis (82 genes)
GO BP
GO:0006427 [list] [network] histidyl-tRNA aminoacylation  (3 genes)  IEA  
GO:0032543 [list] [network] mitochondrial translation  (25 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (603 genes)  IEA  
GO:0005829 [list] [network] cytosol  (756 genes)  IEA  
GO MF
GO:0004821 [list] [network] histidine-tRNA ligase activity  (3 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2117 genes)  IEA  
Protein XP_006358472.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  nucl_plas 2,  mito 1,  cyto_pero 1  (predict for XP_006358472.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_006358472.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102589060

.
sly-u.5
for
101251038

.
ath-u.5
for
AT3G02760

.
gma-u.5
for
100809535

.
gma-u.5
for
100777684

.
vvi-u.5
for
100241489

.
ppo-u.5
for
7455249

.
mtr-u.5
for
25483747

.
osa-u.5
for
4337830

.
zma-u.5
for
103635898

.
zma-u.5
for
100279212

.


Ortholog ID: 7570
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G02760 LOC100809535 LOC100777684 LOC101251038 LOC4337830 LOC100279212 LOC103635898 LOC103843343 LOC103858979 LOC100241489 LOC7455249 LOC25483747 LOC100270649 LOC123191393 LOC123425549 LOC107928358 LOC107909090 LOC106438950 LOC125606966 CHLRE_02g142352v5 LOC8075984 LOC102589060 LOC102629391 LOC100820903 LOC107829876 LOC107823592
Function* Class II aaRS and biotin synthetases superfamily protein histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic-like uncharacterized LOC100279212 histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic-like uncharacterized protein histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic histidine--tRNA ligase, cytoplasmic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot03018 RNA degradation 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta00450 Selenocompound metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta00450 Selenocompound metabolism 4
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820930 100809535 100777684 101251038 4337830 100279212 103635898 103843343 103858979 100241489 7455249 25483747 100270649 123191393 123425549 107928358 107909090 106438950 125606966 66052563 8075984 102589060 102629391 100820903 107829876 107823592
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