ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102604584	RNA-binding protein 2
ath-u.5	AT1G76940	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100786188	RNA-binding protein with multiple splicing-like protein
gma-u.5	100815695	RNA-binding protein 2
gma-u.5	100800440	RNA recognition motif-containing protein
vvi-u.5	100265772	RNA-binding protein 1
vvi-u.5	100257637	RNA-binding protein 1
vvi-u.5	100242739	RNA-binding protein 2
ppo-u.5	7464291	RNA-binding protein 1
ppo-u.5	7462242	nuclear speckle RNA-binding protein A
ppo-u.5	7466407	RNA-binding protein 1
mtr-u.5	11424149	RNA-binding protein 2-like
mtr-u.5	11429869	uncharacterized LOC11429869
mtr-u.5	11444223	RNA-binding protein 2-like
osa-u.5	4339977	RNA-binding protein 1
osa-u.5	9269917	nuclear speckle RNA-binding protein A
osa-u.5	4346231	RNA-binding protein 1
zma-u.5	100381978	uncharacterized LOC100381978
zma-u.5	100274945	uncharacterized LOC100274945
zma-u.5	100382777	uncharacterized LOC100382777

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1335 genes)

IEA

Protein

XP_006362815.1 [sequence] [blastp]
XP_006362816.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 2, pero 1, cyto_nucl 1	(predict for XP_006362815.1)
chlo 5, nucl 2, pero 1, cyto_nucl 1	(predict for XP_006362816.1)

Subcellular
localization
TargetP

mito 8, other 4	(predict for XP_006362815.1)
mito 8, other 4	(predict for XP_006362816.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102604584	ath-u.5 for AT1G76940	gma-u.5 for 100786188	gma-u.5 for 100815695	gma-u.5 for 100800440	vvi-u.5 for 100265772	vvi-u.5 for 100257637	vvi-u.5 for 100242739	ppo-u.5 for 7464291	ppo-u.5 for 7462242	ppo-u.5 for 7466407	mtr-u.5 for 11424149	mtr-u.5 for 11429869	mtr-u.5 for 11444223	osa-u.5 for 4339977	osa-u.5 for 9269917	osa-u.5 for 4346231	zma-u.5 for 100381978	zma-u.5 for 100274945	zma-u.5 for 100382777

Ortholog

Ortholog ID: 782

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein MATERNALLY EXPRESSED GENE 5-like

RNA-binding protein 2

RNA binding domain-containing protein

RNA-binding protein 2

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 2

RNA-binding protein with multiple splicing-like protein

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 1

RNA-binding protein 2

RNA-binding protein 1

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding protein 2-like

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC121204792

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 2

RNA-binding protein 1-like

RNA-binding protein 1

uncharacterized LOC100274945

uncharacterized LOC100381978

RNA-binding protein 1

proline-rich protein 36

RNA-binding protein 1-like

uncharacterized LOC123400025

RNA-binding protein 1-like

protein MATERNALLY EXPRESSED GENE 5

nuclear speckle RNA-binding protein A

RNA-binding protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	6
osa04145	Phagosome	3
osa03040	Spliceosome	3
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	4
zma03083	Polycomb repressive complex	3
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

102595599

102604584

101267497

107771652

107765513

844029

100812551

100786188

103832149

103829381

100265772

100242739

7464527

7462242

25496067

11424149

107904558

121204792

106371345

106347327

102627431

102626977

4339977

4346231

100274945

100381978

123152387

123112777

123407174

123400025

110430991

8060549

100821534

100823400

66052044

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102604584 (sot-r.1 coexpression data)

Top 50 enrichment test to 102604584 (sot-r.1 coexpression data)


Species	sot	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	sly	ghi	nta	cre	tae
Paralog	1	1	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102604584 (sot-r.1 coexpression data)

Top 50 enrichment test to 102604584 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**