ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103635834	Protein RNA-directed DNA methylation 3
zma-r.6	103635834	Protein RNA-directed DNA methylation 3
zma-m.5	103635834	Protein RNA-directed DNA methylation 3
zma-u.5	103631592	protein RNA-directed DNA methylation 3
osa-u.5	9268124	protein RNA-directed DNA methylation 3
ath-u.5	KTF1	kow domain-containing transcription factor 1
gma-u.5	100818587	protein RNA-directed DNA methylation 3
gma-u.5	100787703	protein RNA-directed DNA methylation 3
gma-u.5	100777969	protein RNA-directed DNA methylation 3
sly-u.5	101254655	protein RNA-directed DNA methylation 3
vvi-u.5	100256388	protein RNA-directed DNA methylation 3
ppo-u.5	18102764	protein RNA-directed DNA methylation 3
ppo-u.5	7494923	protein RNA-directed DNA methylation 3
mtr-u.5	11433533	protein RNA-directed DNA methylation 3
mtr-u.5	25485545	protein RNA-directed DNA methylation 3

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II	(33 genes)	IEA
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation	(44 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(427 genes)	IEA

GO CC

GO:0032044 [list] [network] DSIF complex

(7 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(346 genes)

IEA

Protein

XP_008656431.1 [sequence] [blastp]
XP_008656432.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, mito 1	(predict for XP_008656431.1)
nucl 8, mito 1	(predict for XP_008656432.1)

Subcellular
localization
TargetP

chlo 7, other 4	(predict for XP_008656431.1)
other 3, mito 3	(predict for XP_008656432.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103635834	zma-r.6 for 103635834	zma-m.5 for 103635834	zma-u.5 for 103631592	osa-u.5 for 9268124	ath-u.5 for KTF1	gma-u.5 for 100818587	gma-u.5 for 100787703	gma-u.5 for 100777969	sly-u.5 for 101254655	vvi-u.5 for 100256388	ppo-u.5 for 18102764	ppo-u.5 for 7494923	mtr-u.5 for 11433533	mtr-u.5 for 25485545

Ortholog

Ortholog ID: 8582

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

KTF1

Function^*

Protein RNA-directed DNA methylation 3

protein RNA-directed DNA methylation 3

kow domain-containing transcription factor 1

protein RNA-directed DNA methylation 3

protein RNA-directed DNA methylation 3-like

protein RNA-directed DNA methylation 3

uncharacterized LOC107778095

uncharacterized LOC107762737

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2
tae04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2
tae04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03460	Fanconi anemia pathway	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	3
mtr03013	Nucleocytoplasmic transport	2
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot00380	Tryptophan metabolism	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta03410	Base excision repair	2
nta03440	Homologous recombination	2

Expression

Expression pattern

Entrez Gene ID^*

103635834

103631592

8067483

9268124

123061843

123182551

123446721

100838678

830308

100818587

100777969

101254655

103847311

100256388

7494923

18102764

11433533

25485545

107915791

107939271

106372532

125592304

102606156

102627386

107778095

107762737

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103635834 (zma-u.5 coexpression data)

Top 50 enrichment test to 103635834 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	4	1	1	3	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103635834 (zma-u.5 coexpression data)

Top 50 enrichment test to 103635834 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**