ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106366017	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
bna-r.1	106428449	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
bna-r.1	106411623	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
bna-r.1	106348281	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
bra-r.6	103865831	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
bra-r.6	103874286	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
ath-u.5	SIGE	sigma factor E
ghi-r.1	107947260	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
ghi-r.1	107929486	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
cit-r.1	102609535	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
gma-u.5	SIG5B	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
gma-u.5	100811515	RNA polymerase sigma factor rpoD-like
gma-u.5	100796580	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
vvi-u.5	100250120	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
ppo-u.5	18105512	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
ppo-u.5	18103620	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
mtr-u.5	11428191	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
sly-u.5	101252660	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
sot-r.1	102586954	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
nta-r.1	107795222	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
nta-r.1	107829846	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
osa-u.5	4339759	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
zma-u.5	103630810	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
tae-r.2	123183313	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
tae-r.2	123070039	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
tae-r.2	123148959	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
hvu-r.1	123452201	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
sbi-r.1	8066537	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
bdi-r.1	100821196	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

Annotation

functional annotation

KEGG

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation	(224 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(5322 genes)	IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(3791 genes)

IEA

Protein

XP_013661013.2 [sequence] [blastp]
XP_013661014.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1, mito 1, extr 1, golg 1	(predict for XP_013661013.2)
chlo 4, cyto 4, nucl 1, mito 1, extr 1, golg 1	(predict for XP_013661014.2)

Subcellular
localization
TargetP

chlo 6	(predict for XP_013661013.2)
chlo 6	(predict for XP_013661014.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106366017	bna-r.1 for 106428449	bna-r.1 for 106411623	bna-r.1 for 106348281	bra-r.6 for 103865831	bra-r.6 for 103874286	ath-u.5 for SIGE	ghi-r.1 for 107947260	ghi-r.1 for 107929486	cit-r.1 for 102609535	gma-u.5 for SIG5B	gma-u.5 for 100811515	gma-u.5 for 100796580	vvi-u.5 for 100250120	ppo-u.5 for 18105512	ppo-u.5 for 18103620	mtr-u.5 for 11428191	sly-u.5 for 101252660	sot-r.1 for 102586954	nta-r.1 for 107795222	nta-r.1 for 107829846	osa-u.5 for 4339759	zma-u.5 for 103630810	tae-r.2 for 123183313	tae-r.2 for 123070039	tae-r.2 for 123148959	hvu-r.1 for 123452201	sbi-r.1 for 8066537	bdi-r.1 for 100821196

Ortholog

Ortholog ID: 7735

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SIGE

SIG5B

Function^*