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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106391481   polyadenylation and cleavage factor homolog 4 
 bna-r.1   125585640   polyadenylation and cleavage factor homolog 4-like 
 bna-r.1   106451108   polyadenylation and cleavage factor homolog 4 
 bna-r.1   106396068   polyadenylation and cleavage factor homolog 4 
 bra-r.6   103867279   polyadenylation and cleavage factor homolog 4 
 bra-r.6   103865551   polyadenylation and cleavage factor homolog 4 
 ath-u.5   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ghi-r.1   107936636   polyadenylation and cleavage factor homolog 4 
 ghi-r.1   107922273   polyadenylation and cleavage factor homolog 4 
 ghi-r.1   107947737   polyadenylation and cleavage factor homolog 4 
 cit-r.1   102610910   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100807857   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100788958   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100811629   polyadenylation and cleavage factor homolog 4 
 vvi-u.5   100251089   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   18100065   uncharacterized LOC18100065 
 mtr-u.5   11435271   uncharacterized LOC11435271 
 mtr-u.5   25483891   uncharacterized LOC25483891 
 sly-u.5   101244024   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101246003   polyadenylation and cleavage factor homolog 4 
 sot-r.1   102597998   uncharacterized LOC102597998 
 sot-r.1   102593629   polyadenylation and cleavage factor homolog 4 
 nta-r.1   107817412   polyadenylation and cleavage factor homolog 4 
 nta-r.1   107795733   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4347878   polyadenylation and cleavage factor homolog 4 
 zma-u.5   103632446   ENTH/VHS family protein 
 zma-u.5   103647268   ENTH/VHS family protein 
 tae-r.2   123090547   polyadenylation and cleavage factor homolog 4 
 sbi-r.1   8061689   uncharacterized LOC8061689 

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Top 50 coexpressed genes to 106391481 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106391481 (bna-r.1 coexpression data)

CoexMap"106391481"


bnaLOC106391481 | Entrez gene ID : 106391481    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi bdi cre hvu
Paralog 4 2 1 3 1 3 1 1 2 2 2 2 1 2 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (14 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (47 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (46 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013687599.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013687599.2)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_013687599.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106391481
bna-r.1
for
125585640
bna-r.1
for
106451108
bna-r.1
for
106396068
bra-r.6
for
103867279
bra-r.6
for
103865551
ath-u.5
for
AT2G36480
ghi-r.1
for
107936636
ghi-r.1
for
107922273
ghi-r.1
for
107947737
cit-r.1
for
102610910
gma-u.5
for
100807857
gma-u.5
for
100788958
gma-u.5
for
100811629
vvi-u.5
for
100251089
ppo-u.5
for
18100065
mtr-u.5
for
11435271
mtr-u.5
for
25483891
sly-u.5
for
101244024
sly-u.5
for
101246003
sot-r.1
for
102597998
sot-r.1
for
102593629
nta-r.1
for
107817412
nta-r.1
for
107795733
osa-u.5
for
4347878
zma-u.5
for
103632446
zma-u.5
for
103647268
tae-r.2
for
123090547
sbi-r.1
for
8061689


Ortholog ID: 6236
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma gma vvi ppo mtr mtr sly sly sot sot nta nta osa zma zma tae sbi
Symbol LOC106451108 LOC106396068 LOC125609295 LOC103867279 LOC103865551 AT2G36480 LOC107922273 LOC121216117 LOC107921940 LOC102610910 LOC100807857 LOC100811629 LOC102662278 LOC100251089 LOC18100065 LOC11435271 LOC25483891 LOC101244024 LOC101246003 LOC102597998 LOC102593629 LOC107817412 LOC107795733 LOC4347878 LOC103632446 LOC103647268 LOC123090547 LOC8061689
Function* polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 pre-mRNA cleavage complex 2 Pcf11-like protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 uncharacterized LOC18100065 uncharacterized LOC11435271 uncharacterized LOC25483891 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC102597998 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 ENTH/VHS family protein ENTH/VHS family protein polyadenylation and cleavage factor homolog 4 uncharacterized LOC8061689
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106451108 106396068 125609295 103867279 103865551 818222 107922273 121216117 107921940 102610910 100807857 100811629 102662278 100251089 18100065 11435271 25483891 101244024 101246003 102597998 102593629 107817412 107795733 4347878 103632446 103647268 123090547 8061689
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