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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G04840   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107934426   pentatricopeptide repeat-containing protein At1g04840 
 ghi-r.1   107936089   pentatricopeptide repeat-containing protein At1g04840 
 cit-r.1   102616932   pentatricopeptide repeat-containing protein At1g04840 
 vvi-u.5   100245116   pentatricopeptide repeat-containing protein At1g04840 
 ppo-u.5   7461658   pentatricopeptide repeat-containing protein At1g04840 
 sly-u.5   101246762   pentatricopeptide repeat-containing protein At1g04840 
 sot-r.1   102584565   pentatricopeptide repeat-containing protein At1g04840 
 nta-r.1   107786336   pentatricopeptide repeat-containing protein At1g04840-like 
 nta-r.1   107800995   pentatricopeptide repeat-containing protein At1g04840-like 

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Top 50 coexpressed genes to AT1G04840 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G04840 (ath-u.5 coexpression data)

CoexMap"106401859"


bnaLOC106401859 | Entrez gene ID : 106401859    
Species ath ghi cit vvi ppo sly sot nta bdi osa tae bna zma cre mtr sbi gma bra hvu
Paralog 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (870 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013697923.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1  (predict for XP_013697923.2)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_013697923.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT1G04840
ghi-r.1
for
107934426
ghi-r.1
for
107936089
cit-r.1
for
102616932
vvi-u.5
for
100245116
ppo-u.5
for
7461658
sly-u.5
for
101246762
sot-r.1
for
102584565
nta-r.1
for
107786336
nta-r.1
for
107800995


Ortholog ID: 14061
Species ath ghi ghi cit vvi ppo sly sot nta nta
Symbol AT1G04840 LOC107934426 LOC107936089 LOC102616932 LOC100245116 LOC7461658 LOC101246762 LOC102584565 LOC107786336 LOC107800995
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840 pentatricopeptide repeat-containing protein At1g04840-like pentatricopeptide repeat-containing protein At1g04840-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839402 107934426 107936089 102616932 100245116 7461658 101246762 102584565 107786336 107800995
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