ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106407676	nuclear transcription factor Y subunit A-7
bna-r.1	125600621	nuclear transcription factor Y subunit A-4-like
bna-r.1	125609344	nuclear transcription factor Y subunit A-4-like
bra-r.6	103832749	nuclear transcription factor Y subunit A-5
bra-r.6	103840389	nuclear transcription factor Y subunit A-7
bra-r.6	103867423	nuclear transcription factor Y subunit A-4
ath-u.5	NF-YA4	nuclear factor Y, subunit A4
ath-u.5	NF-YA7	nuclear factor Y, subunit A7
ghi-r.1	107930306	nuclear transcription factor Y subunit A-7
ghi-r.1	107958516	nuclear transcription factor Y subunit A-7
ghi-r.1	107924915	nuclear transcription factor Y subunit A-7
cit-r.1	102608084	nuclear transcription factor Y subunit A-7
gma-u.5	NF-YA16	nuclear transcription factor Y subunit A-16
gma-u.5	100499754	putative CCAAT-binding transcription factor
gma-u.5	NF-YA08	nuclear transcription factor Y subunit A-8
vvi-u.5	100249692	nuclear transcription factor Y subunit A-7
ppo-u.5	7487567	nuclear transcription factor Y subunit A-7
ppo-u.5	18103293	nuclear transcription factor Y subunit A-7
mtr-u.5	11413865	nuclear transcription factor Y subunit A-7
sly-u.5	101260988	nuclear transcription factor Y subunit A-7
sot-r.1	102579930	nuclear transcription factor Y subunit A-7-like
sot-r.1	102600275	nuclear transcription factor Y subunit A-7
nta-r.1	107787566	nuclear transcription factor Y subunit A-7
nta-r.1	107807858	nuclear transcription factor Y subunit A-7-like
nta-r.1	107821024	uncharacterized LOC107821024
osa-u.5	4352778	nuclear transcription factor Y subunit A-7
osa-u.5	4344874	nuclear transcription factor Y subunit A-4
zma-u.5	100383246	uncharacterized LOC100383246
zma-u.5	100284857	uncharacterized LOC100284857
zma-u.5	100194365	uncharacterized LOC100194365
tae-r.2	123102190	nuclear transcription factor Y subunit A-7
tae-r.2	123119379	nuclear transcription factor Y subunit A-7
tae-r.2	123110357	nuclear transcription factor Y subunit A-7
hvu-r.1	123449586	nuclear transcription factor Y subunit A-7-like
hvu-r.1	123396343	nuclear transcription factor Y subunit A-7
sbi-r.1	8070158	nuclear transcription factor Y subunit A-7
sbi-r.1	8059799	nuclear transcription factor Y subunit A-7
bdi-r.1	100842793	nuclear transcription factor Y subunit A-7
bdi-r.1	100844028	nuclear transcription factor Y subunit A-7

Top 50 coexpressed genes to 106407676 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106407676 (bna-r.1 coexpression data)

CoexMap"106407676"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex

(71 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(792 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(968 genes)	IEA

Protein

XP_013703999.1 [sequence] [blastp]
XP_013704000.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_013703999.1)
nucl 9	(predict for XP_013704000.1)

Subcellular
localization
TargetP

other 9	(predict for XP_013703999.1)
other 9	(predict for XP_013704000.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106407676	bna-r.1 for 125600621	bna-r.1 for 125609344	bra-r.6 for 103832749	bra-r.6 for 103840389	bra-r.6 for 103867423	ath-u.5 for NF-YA4	ath-u.5 for NF-YA7	ghi-r.1 for 107930306	ghi-r.1 for 107958516	ghi-r.1 for 107924915	cit-r.1 for 102608084	gma-u.5 for NF-YA16	gma-u.5 for 100499754	gma-u.5 for NF-YA08	vvi-u.5 for 100249692	ppo-u.5 for 7487567	ppo-u.5 for 18103293	mtr-u.5 for 11413865	sly-u.5 for 101260988	sot-r.1 for 102579930	sot-r.1 for 102600275	nta-r.1 for 107787566	nta-r.1 for 107807858	nta-r.1 for 107821024	osa-u.5 for 4352778	osa-u.5 for 4344874	zma-u.5 for 100383246	zma-u.5 for 100284857	zma-u.5 for 100194365	tae-r.2 for 123102190	tae-r.2 for 123119379	tae-r.2 for 123110357	hvu-r.1 for 123449586	hvu-r.1 for 123396343	sbi-r.1 for 8070158	sbi-r.1 for 8059799	bdi-r.1 for 100842793	bdi-r.1 for 100844028

Ortholog

Ortholog ID: 3914

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NF-YA4

NF-YA7

NF-YA16

NF-YA04

Function^*

nuclear transcription factor Y subunit A-4-like