ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106414139	sm-like protein LSM7
bna-r.1	111208307	sm-like protein LSM7
bna-r.1	106389258	sm-like protein LSM7
bra-r.6	103875380	sm-like protein LSM7
ath-u.5	EMB2816	Small nuclear ribonucleoprotein family protein
ghi-r.1	107918492	sm-like protein LSM7
ghi-r.1	107926248	sm-like protein LSM7
cit-r.1	102624901	sm-like protein LSM7
gma-u.5	100807381	sm-like protein LSM7
gma-u.5	100306498	uncharacterized LOC100306498
vvi-u.5	100855332	sm-like protein LSM7
ppo-u.5	7481998	sm-like protein LSM7
ppo-u.5	7480092	sm-like protein LSM7
mtr-u.5	25501029	sm-like protein LSM7
mtr-u.5	11407370	sm-like protein LSM7
sly-u.5	101258986	sm-like protein LSM7
sot-r.1	102580345	sm-like protein LSM7
nta-r.1	107784494	sm-like protein LSM7
nta-r.1	107765381	sm-like protein LSM7
nta-r.1	142173851	sm-like protein LSM7
osa-u.5	4344803	sm-like protein LSM7
zma-u.5	100282349	LSM7-like
zma-u.5	100285982	LSM7-like
tae-r.2	123055025	sm-like protein LSM7
tae-r.2	123047226	sm-like protein LSM7
tae-r.2	123161401	sm-like protein LSM7
hvu-r.1	123428240	sm-like protein LSM7
hvu-r.1	123410023	sm-like protein LSM7
sbi-r.1	8077679	sm-like protein LSM7
bdi-r.1	100846427	sm-like protein LSM7
bdi-r.1	100841801	sm-like protein LSM7
cre-r.1	CHLRE_03g164101v5	uncharacterized protein

Top 50 coexpressed genes to 106414139 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106414139 (bna-r.1 coexpression data)

CoexMap"106414139"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03018 [list] [network] RNA degradation (380 genes)

bna03040 [list] [network] Spliceosome (912 genes)

GO BP

GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process	(180 genes)	IEA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(548 genes)	IEA

GO CC

GO:1990726 [list] [network] Lsm1-7-Pat1 complex	(27 genes)	IEA
GO:0005688 [list] [network] U6 snRNP	(34 genes)	IEA
GO:0005689 [list] [network] U12-type spliceosomal complex	(61 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(106 genes)	IEA
GO:0097526 [list] [network] spliceosomal tri-snRNP complex	(117 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(222 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(3852 genes)

IEA

Protein

XP_048600240.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, cyto 2, nucl 1, chlo_mito 1, extr 1, cysk_nucl 1, cyto_plas 1

(predict for XP_048600240.1)

Subcellular
localization
TargetP

other 8

(predict for XP_048600240.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106414139	bna-r.1 for 111208307	bna-r.1 for 106389258	bra-r.6 for 103875380	ath-u.5 for EMB2816	ghi-r.1 for 107918492	ghi-r.1 for 107926248	cit-r.1 for 102624901	gma-u.5 for 100807381	gma-u.5 for 100306498	vvi-u.5 for 100855332	ppo-u.5 for 7481998	ppo-u.5 for 7480092	mtr-u.5 for 25501029	mtr-u.5 for 11407370	sly-u.5 for 101258986	sot-r.1 for 102580345	nta-r.1 for 107784494	nta-r.1 for 107765381	nta-r.1 for 142173851	osa-u.5 for 4344803	zma-u.5 for 100282349	zma-u.5 for 100285982	tae-r.2 for 123055025	tae-r.2 for 123047226	tae-r.2 for 123161401	hvu-r.1 for 123428240	hvu-r.1 for 123410023	sbi-r.1 for 8077679	bdi-r.1 for 100846427	bdi-r.1 for 100841801	cre-r.1 for CHLRE_03g164101v5

Ortholog

Ortholog ID: 5255

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EMB2816

Function^*

sm-like protein LSM7

Small nuclear ribonucleoprotein family protein

sm-like protein LSM7

uncharacterized LOC100306498

sm-like protein LSM7

LSM7-like

sm-like protein LSM7

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	4
bna03040	Spliceosome	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	6
bna03018	RNA degradation	2
bna03040	Spliceosome	2
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	4
bra03040	Spliceosome	3
bra03018	RNA degradation	2
bra03060	Protein export	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03020	RNA polymerase	2
ath03420	Nucleotide excision repair	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	6
cit03018	RNA degradation	3
cit03040	Spliceosome	3
cit04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6
gma03010	Ribosome	3
gma04120	Ubiquitin mediated proteolysis	2
gma03018	RNA degradation	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03018	RNA degradation	3
gma03420	Nucleotide excision repair	3
gma04120	Ubiquitin mediated proteolysis	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03018	RNA degradation	4
ppo03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	6
ppo03018	RNA degradation	3
ppo03040	Spliceosome	3
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	3
sot03020	RNA polymerase	2
sot03420	Nucleotide excision repair	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03018	RNA degradation	3
nta03010	Ribosome	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03018	RNA degradation	5
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03018	RNA degradation	5
nta03010	Ribosome	2
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	2
osa03040	Spliceosome	2
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma03020	RNA polymerase	2
zma03420	Nucleotide excision repair	2
zma03018	RNA degradation	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3
tae03040	Spliceosome	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae03040	Spliceosome	4
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03018	RNA degradation	3
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	12
hvu03040	Spliceosome	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu03013	Nucleocytoplasmic transport	2
hvu03040	Spliceosome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	6
sbi03020	RNA polymerase	5
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03040	Spliceosome	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11
cre03013	Nucleocytoplasmic transport	3
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

106414139

106389258

103875380

814913

107918492

107926248

102624901

100807381

100306498

100855332

7481998

7480092

25501029

11407370

101258986

102580345

107784494

107765381

142173851

4344803

100282349

100285982

123047226

123161401

123165507

123428240

123410023

8077679

100846427

100841801

5729059

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	1	2	1	2	1	2	2	1	1	3	1	2	3	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106414139 (bna-r.1 coexpression data)

Top 50 enrichment test to 106414139 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**