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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480092   sm-like protein LSM7 
 ppo-r.4   7480092   sm-like protein LSM7 
 ppo-u.5   7481998   sm-like protein LSM7 
 gma-u.5   100807381   sm-like protein LSM7 
 gma-u.5   100306498   uncharacterized LOC100306498 
 mtr-u.5   25501029   sm-like protein LSM7 
 mtr-u.5   11407370   sm-like protein LSM7 
 ath-u.5   EMB2816   Small nuclear ribonucleoprotein family protein 
 bra-r.6   103875380   sm-like protein LSM7 
 vvi-u.5   100855332   sm-like protein LSM7 
 ghi-r.1   107926248   sm-like protein LSM7 
 ghi-r.1   107918492   sm-like protein LSM7 
 bna-r.1   106389258   sm-like protein LSM7 
 bna-r.1   111208307   sm-like protein LSM7 
 bna-r.1   106414139   sm-like protein LSM7 
 cit-r.1   102624901   sm-like protein LSM7 
 sly-u.5   101258986   sm-like protein LSM7 
 sot-r.1   102580345   sm-like protein LSM7 
 nta-r.1   107784494   sm-like protein LSM7 
 nta-r.1   107765381   sm-like protein LSM7 
 nta-r.1   142173851   sm-like protein LSM7 
 osa-u.5   4344803   sm-like protein LSM7 
 zma-u.5   100282349   LSM7-like 
 zma-u.5   100285982   LSM7-like 
 tae-r.2   123047226   sm-like protein LSM7 
 tae-r.2   123055025   sm-like protein LSM7 
 tae-r.2   123148105   sm-like protein LSM7 
 hvu-r.1   123428240   sm-like protein LSM7 
 hvu-r.1   123410023   sm-like protein LSM7 
 sbi-r.1   8077679   sm-like protein LSM7 
 bdi-r.1   100846427   sm-like protein LSM7 
 bdi-r.1   100841801   sm-like protein LSM7 
 cre-r.1   CHLRE_03g164101v5   uncharacterized protein 

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Top 50 coexpressed genes to 7480092 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480092 (ppo-u.5 coexpression data)

CoexMap"7480092"


ppoLOC7480092 | Entrez gene ID : 7480092    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 1 1 1 2 3 1 1 1 3 1 2 3 2 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03018 [list] [network] RNA degradation (133 genes)
pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (70 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (10 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (13 genes)  IEA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (24 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (30 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (41 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (72 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_002299952.1 [sequence] [blastp]
XP_024458951.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 1,  chlo_mito 1,  cyto 1,  extr 1,  cysk_nucl 1  (predict for XP_002299952.1)
chlo 3,  nucl 1,  chlo_mito 1,  cyto 1,  extr 1,  cysk_nucl 1  (predict for XP_024458951.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002299952.1)
other 8  (predict for XP_024458951.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480092
ppo-r.4
for
7480092
ppo-u.5
for
7481998
gma-u.5
for
100807381
gma-u.5
for
100306498
mtr-u.5
for
25501029
mtr-u.5
for
11407370
ath-u.5
for
EMB2816
bra-r.6
for
103875380
vvi-u.5
for
100855332
ghi-r.1
for
107926248
ghi-r.1
for
107918492
bna-r.1
for
106389258
bna-r.1
for
111208307
bna-r.1
for
106414139
cit-r.1
for
102624901
sly-u.5
for
101258986
sot-r.1
for
102580345
nta-r.1
for
107784494
nta-r.1
for
107765381
nta-r.1
for
142173851
osa-u.5
for
4344803
zma-u.5
for
100282349
zma-u.5
for
100285982
tae-r.2
for
123047226
tae-r.2
for
123055025
tae-r.2
for
123148105
hvu-r.1
for
123428240
hvu-r.1
for
123410023
sbi-r.1
for
8077679
bdi-r.1
for
100846427
bdi-r.1
for
100841801
cre-r.1
for
CHLRE_03g164101v5


Ortholog ID: 5255
Species ppo ppo gma gma mtr mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC7480092 LOC7481998 LOC100807381 LOC100306498 LOC25501029 LOC11407370 EMB2816 LOC103875380 LOC100855332 LOC107926248 LOC107918492 LOC106389258 LOC106414139 LOC102624901 LOC101258986 LOC102580345 LOC107784494 LOC107765381 LOC142173851 LOC4344803 LOC100282349 LOC100285982 LOC123047226 LOC123161401 LOC123165507 LOC123428240 LOC123410023 LOC8077679 LOC100846427 LOC100841801 CHLRE_03g164101v5
Function* sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 uncharacterized LOC100306498 sm-like protein LSM7 sm-like protein LSM7 Small nuclear ribonucleoprotein family protein sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 LSM7-like LSM7-like sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 6
ppo03018 RNA degradation 3
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 4
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03010 Ribosome 3
gma04120 Ubiquitin mediated proteolysis 2
gma03018 RNA degradation 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03018 RNA degradation 3
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03040 Spliceosome 3
bra03018 RNA degradation 2
bra03060 Protein export 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 4
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 2
bna04141 Protein processing in endoplasmic reticulum 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 6
cit03018 RNA degradation 3
cit03040 Spliceosome 3
cit04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03018 RNA degradation 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03018 RNA degradation 5
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03018 RNA degradation 5
nta03010 Ribosome 2
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa03040 Spliceosome 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
zma03018 RNA degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae03040 Spliceosome 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03018 RNA degradation 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu03040 Spliceosome 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu03013 Nucleocytoplasmic transport 2
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 6
sbi03020 RNA polymerase 5
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03040 Spliceosome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03013 Nucleocytoplasmic transport 3
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7480092 7481998 100807381 100306498 25501029 11407370 814913 103875380 100855332 107926248 107918492 106389258 106414139 102624901 101258986 102580345 107784494 107765381 142173851 4344803 100282349 100285982 123047226 123161401 123165507 123428240 123410023 8077679 100846427 100841801 5729059
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