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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106451653   DNA polymerase I A, chloroplastic/mitochondrial-like 
 ath-u.5   POLGAMMA1   polymerase gamma 1 
 ath-u.5   POLGAMMA2   polymerase gamma 2 
 gma-u.5   100807239   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100797016   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100790704   DNA polymerase I A, chloroplastic/mitochondrial 
 vvi-u.5   100257153   DNA polymerase I B, chloroplastic/mitochondrial 
 ppo-u.5   18095942   DNA polymerase I A, chloroplastic/mitochondrial 
 ppo-u.5   7470944   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444798   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11436067   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444264   DNA polymerase I A, chloroplastic/mitochondrial 
 sly-u.5   101252794   DNA polymerase I B, chloroplastic/mitochondrial 
 osa-u.5   4337150   DNA polymerase I A, chloroplastic-like 
 osa-u.5   4344789   DNA polymerase I A, chloroplastic-like 
 osa-u.5   4344791   DNA polymerase I B, mitochondrial-like 
 zma-u.5   103641202   DNA polymerase I A, chloroplastic 
 zma-u.5   103642101   DNA polymerase I A, chloroplastic 

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Top 50 coexpressed genes to 106451653 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106451653 (bna-r.1 coexpression data)

CoexMap"106451653"


bnaLOC106451653 | Entrez gene ID : 106451653    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 2 3 1 2 3 1 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03030 [list] [network] DNA replication (118 genes)
bna03410 [list] [network] Base excision repair (126 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
bna03440 [list] [network] Homologous recombination (136 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (215 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (365 genes)  IEA  
GO CC
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (51 genes)  IEA  
GO:0008408 [list] [network] 3'-5' exonuclease activity  (171 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048635139.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2,  cyto_mito 1  (predict for XP_048635139.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_048635139.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106451653
ath-u.5
for
POLGAMMA1
ath-u.5
for
POLGAMMA2
gma-u.5
for
100807239
gma-u.5
for
100797016
gma-u.5
for
100790704
vvi-u.5
for
100257153
ppo-u.5
for
18095942
ppo-u.5
for
7470944
mtr-u.5
for
11444798
mtr-u.5
for
11436067
mtr-u.5
for
11444264
sly-u.5
for
101252794
osa-u.5
for
4337150
osa-u.5
for
4344789
osa-u.5
for
4344791
zma-u.5
for
103641202
zma-u.5
for
103642101


Ortholog ID: 4387
Species bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae hvu sbi sbi bdi bdi cre
Symbol LOC106385435 LOC106377588 LOC103869311 LOC103868605 POLGAMMA2 POLGAMMA1 LOC107938642 LOC107917795 LOC102617268 LOC100807239 LOC100797016 LOC100257153 LOC18095942 LOC7470944 LOC11436067 LOC11444264 LOC101252794 LOC102581629 LOC107802958 LOC107808080 LOC4344789 LOC4344791 LOC103641202 LOC103642101 LOC123047203 LOC123190853 LOC123428218 LOC8080898 LOC8068448 LOC100833898 LOC100823216 CHLRE_08g363837v5
Function* DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial polymerase gamma 2 polymerase gamma 1 DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial-like DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial-like DNA polymerase I A, chloroplastic-like DNA polymerase I B, mitochondrial-like DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic-like DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03410 Base excision repair 5
bna03420 Nucleotide excision repair 5
bna03440 Homologous recombination 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106385435 106377588 103869311 103868605 841506 821600 107938642 107917795 102617268 100807239 100797016 100257153 18095942 7470944 11436067 11444264 101252794 102581629 107802958 107808080 4344789 4344791 103641202 103642101 123047203 123190853 123428218 8080898 8068448 100833898 100823216 5721623
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