ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4344789	DNA polymerase I A, chloroplastic-like
osa-r.6	4344789	DNA polymerase I A, chloroplastic-like
osa-m.8	4344789	DNA polymerase I A, chloroplastic-like
osa-e.1	4344789	DNA polymerase I A, chloroplastic-like
osa-u.5	4337150	DNA polymerase I A, chloroplastic-like
osa-u.5	4344791	DNA polymerase I B, mitochondrial-like
zma-u.5	103641202	DNA polymerase I A, chloroplastic
zma-u.5	103642101	DNA polymerase I A, chloroplastic
ath-u.5	POLGAMMA1	polymerase gamma 1
ath-u.5	POLGAMMA2	polymerase gamma 2
gma-u.5	100807239	DNA polymerase I A, chloroplastic/mitochondrial
gma-u.5	100797016	DNA polymerase I A, chloroplastic/mitochondrial
gma-u.5	100790704	DNA polymerase I A, chloroplastic/mitochondrial
sly-u.5	101252794	DNA polymerase I B, chloroplastic/mitochondrial
vvi-u.5	100257153	DNA polymerase I B, chloroplastic/mitochondrial
ppo-u.5	7470944	DNA polymerase I A, chloroplastic/mitochondrial
ppo-u.5	18095942	DNA polymerase I A, chloroplastic/mitochondrial
mtr-u.5	11444798	DNA polymerase I A, chloroplastic/mitochondrial
mtr-u.5	11444264	DNA polymerase I A, chloroplastic/mitochondrial
mtr-u.5	11436067	DNA polymerase I A, chloroplastic/mitochondrial

Top 50 coexpressed genes to 4344789 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4344789 (osa-u.5 coexpression data)

CoexMap"4344789"

[Cytoscape]

Annotation

functional annotation

KEGG

osa03030 [list] [network] DNA replication (43 genes)

osa03410 [list] [network] Base excision repair (50 genes)

osa03420 [list] [network] Nucleotide excision repair (81 genes)

osa03440 [list] [network] Homologous recombination (57 genes)

GO BP

GO:0006261 [list] [network] DNA-templated DNA replication	(83 genes)	IEA
GO:0006302 [list] [network] double-strand break repair	(110 genes)	IEA

GO CC

GO MF

GO:0003887 [list] [network] DNA-directed DNA polymerase activity	(23 genes)	IEA
GO:0008408 [list] [network] 3'-5' exonuclease activity	(74 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1843 genes)	IEA

Protein

NP_001409378.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 7, chlo_mito 5, cyto_mito 4, chlo 2

(predict for NP_001409378.1)

Subcellular
localization
TargetP

chlo 7, mito 4

(predict for NP_001409378.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4344789	osa-r.6 for 4344789	osa-m.8 for 4344789	osa-e.1 for 4344789	osa-u.5 for 4337150	osa-u.5 for 4344791	zma-u.5 for 103641202	zma-u.5 for 103642101	ath-u.5 for POLGAMMA1	ath-u.5 for POLGAMMA2	gma-u.5 for 100807239	gma-u.5 for 100797016	gma-u.5 for 100790704	sly-u.5 for 101252794	vvi-u.5 for 100257153	ppo-u.5 for 7470944	ppo-u.5 for 18095942	mtr-u.5 for 11444798	mtr-u.5 for 11444264	mtr-u.5 for 11436067

Ortholog

Ortholog ID: 4387

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

DNA polymerase I A, chloroplastic-like

DNA polymerase I B, mitochondrial-like

DNA polymerase I A, chloroplastic

DNA polymerase I A, chloroplastic-like

DNA polymerase I A, chloroplastic

polymerase gamma 2

polymerase gamma 1

DNA polymerase I A, chloroplastic/mitochondrial