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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   POLGAMMA2   polymerase gamma 2 
 ath-r.7   POLGAMMA2   polymerase gamma 2 
 ath-m.9   POLGAMMA2   polymerase gamma 2 
 ath-e.2   POLGAMMA2   polymerase gamma 2 
 ath-m.4.bio   POLGAMMA2   polymerase gamma 2 
 ath-m.4.hor   POLGAMMA2   polymerase gamma 2 
 ath-m.4.lig   POLGAMMA2   polymerase gamma 2 
 ath-m.4.str   POLGAMMA2   polymerase gamma 2 
 ath-m.4.tis   POLGAMMA2   polymerase gamma 2 
 ath-u.5   POLGAMMA1   polymerase gamma 1 
 bra-r.6   103868605   DNA polymerase I A, chloroplastic/mitochondrial 
 bra-r.6   103869311   DNA polymerase I B, chloroplastic/mitochondrial 
 bna-r.1   125596908   DNA polymerase I B, chloroplastic/mitochondrial-like 
 bna-r.1   106451653   DNA polymerase I A, chloroplastic/mitochondrial-like 
 bna-r.1   106451652   DNA polymerase I A, chloroplastic/mitochondrial-like 
 ghi-r.1   107938642   DNA polymerase I B, chloroplastic/mitochondrial 
 ghi-r.1   107917795   DNA polymerase I B, chloroplastic/mitochondrial 
 cit-r.1   102617268   DNA polymerase I B, chloroplastic/mitochondrial 
 gma-u.5   100807239   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100797016   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100790704   DNA polymerase I A, chloroplastic/mitochondrial 
 vvi-u.5   100257153   DNA polymerase I B, chloroplastic/mitochondrial 
 ppo-u.5   18095942   DNA polymerase I A, chloroplastic/mitochondrial 
 ppo-u.5   7470944   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444264   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11436067   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444798   DNA polymerase I A, chloroplastic/mitochondrial 
 sly-u.5   101252794   DNA polymerase I B, chloroplastic/mitochondrial 
 sot-r.1   102581629   DNA polymerase I B, chloroplastic/mitochondrial-like 
 nta-r.1   107808080   DNA polymerase I B, chloroplastic/mitochondrial-like 
 nta-r.1   107778178   DNA polymerase I B, chloroplastic/mitochondrial 
 nta-r.1   107802958   DNA polymerase I B, chloroplastic/mitochondrial 
 osa-u.5   4344791   DNA polymerase I B, mitochondrial-like 
 osa-u.5   4337150   DNA polymerase I A, chloroplastic-like 
 osa-u.5   4344789   DNA polymerase I A, chloroplastic-like 
 zma-u.5   103641202   DNA polymerase I A, chloroplastic 
 zma-u.5   103642101   DNA polymerase I A, chloroplastic 
 tae-r.2   123190853   DNA polymerase I A, chloroplastic 
 tae-r.2   123147085   DNA polymerase I A, chloroplastic 
 tae-r.2   123156588   DNA polymerase I A, chloroplastic 
 hvu-r.1   123428218   DNA polymerase I A, chloroplastic-like 
 sbi-r.1   8068448   DNA polymerase I A, chloroplastic 
 sbi-r.1   8080898   DNA polymerase I A, chloroplastic 
 bdi-r.1   100833898   DNA polymerase I A, chloroplastic 
 bdi-r.1   100823216   DNA polymerase I A, chloroplastic 
 cre-r.1   CHLRE_08g363837v5   uncharacterized protein 

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Top 50 coexpressed genes to POLGAMMA2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to POLGAMMA2 (ath-u.5 coexpression data)

CoexMap"841506"


athPOLGAMMA2 | Entrez gene ID : 841506      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 1 3 1 2 3 1 1 3 3 2 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03410 [list] [network] Base excision repair (50 genes)
ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0006264 [list] [network] mitochondrial DNA replication  (2 genes)  IMP  
GO:0033259 [list] [network] plastid DNA replication  (2 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  IMP  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (9 genes)  TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321058.1 [sequence] [blastp]
NP_175498.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_001321058.1)
chlo 9,  chlo_mito 5  (predict for NP_175498.2)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for NP_001321058.1)
chlo 9,  mito 3  (predict for NP_175498.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
POLGAMMA2
ath-r.7
for
POLGAMMA2
ath-m.9
for
POLGAMMA2
ath-e.2
for
POLGAMMA2
ath-m.4.bio
for
POLGAMMA2
ath-m.4.hor
for
POLGAMMA2
ath-m.4.lig
for
POLGAMMA2
ath-m.4.str
for
POLGAMMA2
ath-m.4.tis
for
POLGAMMA2
ath-u.5
for
POLGAMMA1
bra-r.6
for
103868605
bra-r.6
for
103869311
bna-r.1
for
125596908
bna-r.1
for
106451653
bna-r.1
for
106451652
ghi-r.1
for
107938642
ghi-r.1
for
107917795
cit-r.1
for
102617268
gma-u.5
for
100807239
gma-u.5
for
100797016
gma-u.5
for
100790704
vvi-u.5
for
100257153
ppo-u.5
for
18095942
ppo-u.5
for
7470944
mtr-u.5
for
11444264
mtr-u.5
for
11436067
mtr-u.5
for
11444798
sly-u.5
for
101252794
sot-r.1
for
102581629
nta-r.1
for
107808080
nta-r.1
for
107778178
nta-r.1
for
107802958
osa-u.5
for
4344791
osa-u.5
for
4337150
osa-u.5
for
4344789
zma-u.5
for
103641202
zma-u.5
for
103642101
tae-r.2
for
123190853
tae-r.2
for
123147085
tae-r.2
for
123156588
hvu-r.1
for
123428218
sbi-r.1
for
8068448
sbi-r.1
for
8080898
bdi-r.1
for
100833898
bdi-r.1
for
100823216
cre-r.1
for
CHLRE_08g363837v5


Ortholog ID: 4387
Species ath ath bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr mtr mtr sly sot nta nta nta osa osa osa zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol POLGAMMA2 POLGAMMA1 LOC103868605 LOC103869311 LOC106451652 LOC106385435 LOC106377588 LOC107938642 LOC107917795 LOC102617268 LOC100807239 LOC100797016 LOC100790704 LOC100257153 LOC18095942 LOC7470944 LOC11444264 LOC11436067 LOC11444798 LOC101252794 LOC102581629 LOC107808080 LOC107778178 LOC107802958 LOC4344791 LOC4337150 LOC4344789 LOC103641202 LOC103642101 LOC123190853 LOC123147085 LOC123047203 LOC123428218 LOC8068448 LOC8080898 LOC100833898 LOC100823216 CHLRE_08g363837v5
Function* polymerase gamma 2 polymerase gamma 1 DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial-like DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial-like DNA polymerase I B, chloroplastic/mitochondrial-like DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, mitochondrial-like DNA polymerase I A, chloroplastic-like DNA polymerase I A, chloroplastic-like DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic-like DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03410 Base excision repair 5
bna03420 Nucleotide excision repair 5
bna03440 Homologous recombination 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03020 RNA polymerase 5
tae03013 Nucleocytoplasmic transport 2
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841506 821600 103868605 103869311 106451652 106385435 106377588 107938642 107917795 102617268 100807239 100797016 100790704 100257153 18095942 7470944 11444264 11436067 11444798 101252794 102581629 107808080 107778178 107802958 4344791 4337150 4344789 103641202 103642101 123190853 123147085 123047203 123428218 8068448 8080898 100833898 100823216 5721623
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