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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107766716   E3 ubiquitin-protein ligase At3g02290 
 sly-u.5   101262010   E3 ubiquitin-protein ligase At3g02290 
 sly-u.5   101250758   E3 ubiquitin-protein ligase At3g02290 
 sly-u.5   101252743   E3 ubiquitin-protein ligase At3g02290-like 
 ath-u.5   AT3G02290   RING/U-box superfamily protein 
 ath-u.5   AT5G15790   RING/U-box superfamily protein 
 ath-u.5   AT5G38895   RING/U-box superfamily protein 
 gma-u.5   100790104   RING finger/U-box-containing protein 
 gma-u.5   100788192   E3 ubiquitin-protein ligase At3g02290 
 vvi-u.5   100244614   E3 ubiquitin-protein ligase At3g02290 
 vvi-u.5   100247128   E3 ubiquitin-protein ligase At3g02290 
 ppo-u.5   7497577   E3 ubiquitin-protein ligase At3g02290 
 ppo-u.5   18097684   E3 ubiquitin-protein ligase At3g02290 
 ppo-u.5   18107348   E3 ubiquitin-protein ligase At3g02290 
 mtr-u.5   25495435   E3 ubiquitin-protein ligase At3g02290 
 mtr-u.5   11421579   E3 ubiquitin-protein ligase At3g02290 
 osa-u.5   4327238   E3 ubiquitin-protein ligase At3g02290 
 osa-u.5   4333386   E3 ubiquitin-protein ligase At3g02290 
 osa-u.5   4350962   E3 ubiquitin-protein ligase At3g02290 
 zma-u.5   100282797   uncharacterized LOC100282797 
 zma-u.5   100282360   protein binding protein 
 zma-u.5   100273572   uncharacterized LOC100273572 

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Top 50 coexpressed genes to 107766716 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107766716 (nta-r.1 coexpression data)

CoexMap"107766716"


ntaLOC107766716 | Entrez gene ID : 107766716      
Species nta sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot cre tae
Paralog 1 3 3 2 2 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (660 genes)  IEA  
Protein XP_016441040.2 [sequence] [blastp]
XP_016441041.1 [sequence] [blastp]
XP_016441042.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3  (predict for XP_016441040.2)
nucl 4,  chlo 2,  extr 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_016441041.1)
nucl 4,  chlo 3,  extr 1,  cyto 1,  mito 1  (predict for XP_016441042.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_016441040.2)
other 6,  chlo 4  (predict for XP_016441041.1)
other 6,  chlo 4  (predict for XP_016441042.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107766716
sly-u.5
for
101262010
sly-u.5
for
101250758
sly-u.5
for
101252743
ath-u.5
for
AT3G02290
ath-u.5
for
AT5G15790
ath-u.5
for
AT5G38895
gma-u.5
for
100790104
gma-u.5
for
100788192
vvi-u.5
for
100244614
vvi-u.5
for
100247128
ppo-u.5
for
7497577
ppo-u.5
for
18097684
ppo-u.5
for
18107348
mtr-u.5
for
25495435
mtr-u.5
for
11421579
osa-u.5
for
4327238
osa-u.5
for
4333386
osa-u.5
for
4350962
zma-u.5
for
100282797
zma-u.5
for
100282360
zma-u.5
for
100273572


Ortholog ID: 1055
Species nta nta sly sly sot sot ath gma gma bra vvi vvi ppo ppo mtr mtr ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107810564 LOC107824143 LOC101252743 LOC101262010 LOC102587162 LOC102598476 AT5G38895 LOC100790543 LOC100790104 LOC103863812 LOC100247128 LOC100244614 LOC18097684 LOC7497577 LOC25495435 LOC11421579 LOC107953963 LOC106382857 LOC106407192 LOC102621029 LOC102616991 LOC4327238 LOC4333386 LOC103655759 LOC100273572 LOC123172610 LOC123086083 LOC123448357 LOC123445299 LOC110435333 LOC8064525 LOC100839977 LOC100825451 CHLRE_08g371400v5
Function* E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290-like RING/U-box superfamily protein RING-H2 finger protein RING finger/U-box-containing protein E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase ATL4 uncharacterized LOC100273572 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290-like E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 E3 ubiquitin-protein ligase At3g02290 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 3
sly00600 Sphingolipid metabolism 2
sly04142 Lysosome 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra00920 Sulfur metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 8
ghi00190 Oxidative phosphorylation 4
ghi00310 Lysine degradation 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bna01240 Biosynthesis of cofactors 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00310 Lysine degradation 3
cit00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
osa01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
zma04136 Autophagy - other 2
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00260 Glycine, serine and threonine metabolism 4
sbi01200 Carbon metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi01240 Biosynthesis of cofactors 3
sbi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107810564 107824143 101252743 101262010 102587162 102598476 833881 100790543 100790104 103863812 100247128 100244614 18097684 7497577 25495435 11421579 107953963 106382857 106407192 102621029 102616991 4327238 4333386 103655759 100273572 123172610 123086083 123448357 123445299 110435333 8064525 100839977 100825451 5726852
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