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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107769413   WD repeat-containing protein ATCSA-1 
 sly-u.5   101255378   WD repeat-containing protein ATCSA-1 
 ath-u.5   ATCSA-1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100815581   WD repeat-containing protein ATCSA-1 
 gma-u.5   100790433   WD repeat-containing protein ATCSA-1 
 vvi-u.5   100247086   WD repeat-containing protein ATCSA-1 
 ppo-u.5   7497327   WD repeat-containing protein ATCSA-1 
 mtr-u.5   25489968   WD repeat-containing protein ATCSA-1 
 osa-u.5   4324761   WD repeat-containing protein ATCSA-1 
 osa-u.5   4329118   WD repeat-containing protein ATCSA-1 
 zma-u.5   100275606   uncharacterized LOC100275606 

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Top 50 coexpressed genes to 107769413 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107769413 (nta-r.1 coexpression data)

CoexMap"107769413"


ntaLOC107769413 | Entrez gene ID : 107769413      
Species nta sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot cre tae
Paralog 1 1 1 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03420 [list] [network] Nucleotide excision repair (148 genes)
nta04120 [list] [network] Ubiquitin mediated proteolysis (303 genes)
GO BP
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (8 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (72 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (236 genes)  IEA  
GO CC
GO:0000109 [list] [network] nucleotide-excision repair complex  (14 genes)  IEA  
GO:0031464 [list] [network] Cul4A-RING E3 ubiquitin ligase complex  (24 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016444106.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  mito 1,  vacu 1,  pero 1,  cysk 1  (predict for XP_016444106.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_016444106.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107769413
sly-u.5
for
101255378
ath-u.5
for
ATCSA-1
gma-u.5
for
100815581
gma-u.5
for
100790433
vvi-u.5
for
100247086
ppo-u.5
for
7497327
mtr-u.5
for
25489968
osa-u.5
for
4324761
osa-u.5
for
4329118
zma-u.5
for
100275606


Ortholog ID: 8703
Species nta nta sly sot ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa osa zma tae tae hvu sbi bdi cre cre
Symbol LOC107769413 LOC107816950 LOC101255378 LOC102590960 ATCSA-1 LOC100790433 LOC100815581 LOC103839014 LOC100247086 LOC7497327 LOC25489968 LOC107957912 LOC107958189 LOC106367306 LOC106431654 LOC102614817 LOC4324761 LOC4329118 LOC100275606 LOC123062660 LOC123079817 LOC123444848 LOC8058940 LOC100837859 CHLRE_01g032139v5 CHLRE_01g032100v5
Function* WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 DNA excision repair protein ERCC-8 Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized LOC100275606 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like DNA excision repair protein ERCC-8 DNA excision repair protein ERCC-8 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04136 Autophagy - other 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04120 Ubiquitin mediated proteolysis 2
bra04382 Cornified envelope formation 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107769413 107816950 101255378 102590960 839677 100790433 100815581 103839014 100247086 7497327 25489968 107957912 107958189 106367306 106431654 102614817 4324761 4329118 100275606 123062660 123079817 123444848 8058940 100837859 5715396 66052081
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