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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107957912   WD repeat-containing protein ATCSA-1 
 ghi-r.1   107958189   WD repeat-containing protein ATCSA-1 
 ath-u.5   ATCSA-1   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103839014   WD repeat-containing protein ATCSA-1 
 bna-r.1   106367306   WD repeat-containing protein ATCSA-1 
 bna-r.1   106431654   WD repeat-containing protein ATCSA-1 
 cit-r.1   102614817   WD repeat-containing protein ATCSA-1-like 
 gma-u.5   100815581   WD repeat-containing protein ATCSA-1 
 gma-u.5   100790433   WD repeat-containing protein ATCSA-1 
 vvi-u.5   100247086   WD repeat-containing protein ATCSA-1 
 ppo-u.5   7497327   WD repeat-containing protein ATCSA-1 
 mtr-u.5   25489968   WD repeat-containing protein ATCSA-1 
 sly-u.5   101255378   WD repeat-containing protein ATCSA-1 
 sot-r.1   102590960   DNA excision repair protein ERCC-8 
 nta-r.1   107769413   WD repeat-containing protein ATCSA-1 
 nta-r.1   107816950   WD repeat-containing protein ATCSA-1 
 osa-u.5   4324761   WD repeat-containing protein ATCSA-1 
 osa-u.5   4329118   WD repeat-containing protein ATCSA-1 
 zma-u.5   100275606   uncharacterized LOC100275606 
 tae-r.2   123062660   WD repeat-containing protein ATCSA-1 
 tae-r.2   123079817   WD repeat-containing protein ATCSA-1 
 tae-r.2   123071480   WD repeat-containing protein ATCSA-1 
 hvu-r.1   123444848   WD repeat-containing protein ATCSA-1-like 
 sbi-r.1   8058940   DNA excision repair protein ERCC-8 
 bdi-r.1   100837859   DNA excision repair protein ERCC-8 
 cre-r.1   CHLRE_01g032139v5   uncharacterized protein 
 cre-r.1   CHLRE_01g032100v5   uncharacterized protein 

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Top 50 coexpressed genes to 107957912 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107957912 (ghi-r.1 coexpression data)

CoexMap"107957912"


ghiLOC107957912 | Entrez gene ID : 107957912    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 2 1 3 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03420 [list] [network] Nucleotide excision repair (188 genes)
ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
GO BP
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (8 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (192 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (406 genes)  IEA  
GO CC
GO:0000109 [list] [network] nucleotide-excision repair complex  (12 genes)  IEA  
GO:0031464 [list] [network] Cul4A-RING E3 ubiquitin ligase complex  (23 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016749024.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  mito 1,  pero 1  (predict for XP_016749024.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016749024.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107957912
ghi-r.1
for
107958189
ath-u.5
for
ATCSA-1
bra-r.6
for
103839014
bna-r.1
for
106367306
bna-r.1
for
106431654
cit-r.1
for
102614817
gma-u.5
for
100815581
gma-u.5
for
100790433
vvi-u.5
for
100247086
ppo-u.5
for
7497327
mtr-u.5
for
25489968
sly-u.5
for
101255378
sot-r.1
for
102590960
nta-r.1
for
107769413
nta-r.1
for
107816950
osa-u.5
for
4324761
osa-u.5
for
4329118
zma-u.5
for
100275606
tae-r.2
for
123062660
tae-r.2
for
123079817
tae-r.2
for
123071480
hvu-r.1
for
123444848
sbi-r.1
for
8058940
bdi-r.1
for
100837859
cre-r.1
for
CHLRE_01g032139v5
cre-r.1
for
CHLRE_01g032100v5


Ortholog ID: 8703
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre cre
Symbol LOC107957912 LOC107958189 ATCSA-1 LOC103839014 LOC106367306 LOC106431654 LOC102614817 LOC100815581 LOC100790433 LOC100247086 LOC7497327 LOC25489968 LOC101255378 LOC102590960 LOC107769413 LOC107816950 LOC4324761 LOC4329118 LOC100275606 LOC123062660 LOC123079817 LOC123071480 LOC123444848 LOC8058940 LOC100837859 CHLRE_01g032139v5 CHLRE_01g032100v5
Function* WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 DNA excision repair protein ERCC-8 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized LOC100275606 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like DNA excision repair protein ERCC-8 DNA excision repair protein ERCC-8 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04120 Ubiquitin mediated proteolysis 2
bra04382 Cornified envelope formation 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04136 Autophagy - other 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107957912 107958189 839677 103839014 106367306 106431654 102614817 100815581 100790433 100247086 7497327 25489968 101255378 102590960 107769413 107816950 4324761 4329118 100275606 123062660 123079817 123071480 123444848 8058940 100837859 5715396 66052081
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