ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107783052	uncharacterized LOC107783052
nta-r.1	107793768	uncharacterized LOC107793768
sly-u.5	101266547	uncharacterized LOC101266547
sot-r.1	102603874	uncharacterized LOC102603874
sot-r.1	102578234	splicing factor 1
ath-u.5	AT3G32940	RNA-binding KH domain-containing protein
gma-u.5	100777227	splicing factor 1
gma-u.5	102668428	splicing factor 1
bra-r.6	103874905	protein transport protein Sec24-like CEF
vvi-u.5	100246694	vegetative cell wall protein gp1
ppo-u.5	7461374	uncharacterized LOC7461374
ppo-u.5	7483260	uncharacterized LOC7483260
mtr-u.5	11442475	vegetative cell wall protein gp1
ghi-r.1	121220152	splicing factor 1
ghi-r.1	107938377	splicing factor 1
bna-r.1	106410352	splicing factor 1
bna-r.1	125589775	uncharacterized LOC125589775
cit-r.1	102625244	uncharacterized LOC102625244
osa-u.5	4344412	branchpoint-bridging protein
tae-r.2	123147715	leucine-rich repeat extensin-like protein 5
tae-r.2	123156476	extensin
tae-r.2	123169693	extensin
hvu-r.1	123407899	extensin
sbi-r.1	8068548	splicing factor 1
bdi-r.1	100834620	atrophin-1

Annotation

functional annotation

KEGG

nta03040 [list] [network] Spliceosome (402 genes)

GO BP

GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome

(36 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4980 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(573 genes)

IEA

Protein

XP_075078352.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 4

(predict for XP_075078352.1)

Subcellular
localization
TargetP

chlo 5

(predict for XP_075078352.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107783052	nta-r.1 for 107793768	sly-u.5 for 101266547	sot-r.1 for 102603874	sot-r.1 for 102578234	ath-u.5 for AT3G32940	gma-u.5 for 100777227	gma-u.5 for 102668428	bra-r.6 for 103874905	vvi-u.5 for 100246694	ppo-u.5 for 7461374	ppo-u.5 for 7483260	mtr-u.5 for 11442475	ghi-r.1 for 121220152	ghi-r.1 for 107938377	bna-r.1 for 106410352	bna-r.1 for 125589775	cit-r.1 for 102625244	osa-u.5 for 4344412	tae-r.2 for 123147715	tae-r.2 for 123156476	tae-r.2 for 123169693	hvu-r.1 for 123407899	sbi-r.1 for 8068548	bdi-r.1 for 100834620

Ortholog

Ortholog ID: 10123

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107783052

uncharacterized LOC107793768

uncharacterized LOC101266547

uncharacterized LOC102603874

splicing factor 1

RNA-binding KH domain-containing protein

splicing factor 1

protein transport protein Sec24-like CEF

vegetative cell wall protein gp1

uncharacterized LOC7461374

uncharacterized LOC7483260

vegetative cell wall protein gp1

splicing factor 1

uncharacterized LOC125589775

uncharacterized LOC102625244

branchpoint-bridging protein

leucine-rich repeat extensin-like protein 5

extensin

splicing factor 1

atrophin-1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta00230	Purine metabolism	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta00230	Purine metabolism	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03013	Nucleocytoplasmic transport	4
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	10
ppo03013	Nucleocytoplasmic transport	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04016	MAPK signaling pathway - plant	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

107783052

107793768

101266547

102603874

102578234

823058

100777227

102668428

103874905

100246694

7461374

7483260

11442475

121220152

107938377

106410352

125589775

102625244

4344412

123147715

123156476

123169693

123407899

8068548

100834620

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107783052 (nta-r.1 coexpression data)

Top 50 enrichment test to 107783052 (nta-r.1 coexpression data)


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	tae	hvu	sbi	bdi	zma	cre
Paralog	2	1	2	1	2	1	1	2	1	2	2	1	1	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107783052 (nta-r.1 coexpression data)

Top 50 enrichment test to 107783052 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**