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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8068548   splicing factor 1 
 osa-u.5   4344412   branchpoint-bridging protein 
 ath-u.5   AT3G32940   RNA-binding KH domain-containing protein 
 gma-u.5   102668428   splicing factor 1 
 gma-u.5   100777227   splicing factor 1 
 sly-u.5   101266547   uncharacterized LOC101266547 
 vvi-u.5   100246694   vegetative cell wall protein gp1 
 ppo-u.5   7483260   uncharacterized LOC7483260 
 ppo-u.5   7461374   uncharacterized LOC7461374 
 mtr-u.5   11442475   vegetative cell wall protein gp1 

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Top 50 coexpressed genes to 8068548 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8068548 (sbi-r.1 coexpression data)

CoexMap"8068548"


sbiLOC8068548 | Entrez gene ID : 8068548      
Species sbi osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot zma tae bna ghi
Paralog 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (19 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_002444905.1 [sequence] [blastp]
XP_021320787.1 [sequence] [blastp]
XP_021320788.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  E.R. 2,  plas 1,  vacu 1,  mito 1,  extr 1,  golg_plas 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_002444905.1)
nucl 3,  E.R. 2,  nucl_plas 2,  plas 1,  vacu 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_021320787.1)
nucl 3,  E.R. 2,  nucl_plas 2,  plas 1,  vacu 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_021320788.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002444905.1)
chlo 8  (predict for XP_021320787.1)
chlo 8  (predict for XP_021320788.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8068548

.
osa-u.5
for
4344412

.
ath-u.5
for
AT3G32940

.
gma-u.5
for
102668428

.
gma-u.5
for
100777227

.
sly-u.5
for
101266547

.
vvi-u.5
for
100246694

.
ppo-u.5
for
7483260

.
ppo-u.5
for
7461374

.
mtr-u.5
for
11442475

.


Ortholog ID: 10123
Species ath gma gma sly osa bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT3G32940 LOC100777227 LOC102668428 LOC101266547 LOC4344412 LOC103874905 LOC100246694 LOC7483260 LOC7461374 LOC11442475 LOC123169693 LOC123147715 LOC123407899 LOC121220152 LOC107938377 LOC125589775 LOC106410352 LOC8068548 LOC102578234 LOC102603874 LOC102625244 LOC100834620 LOC107793768 LOC107783052
Function* RNA-binding KH domain-containing protein splicing factor 1 splicing factor 1 uncharacterized LOC101266547 branchpoint-bridging protein protein transport protein Sec24-like CEF vegetative cell wall protein gp1 uncharacterized LOC7483260 uncharacterized LOC7461374 vegetative cell wall protein gp1 extensin leucine-rich repeat extensin-like protein 5 extensin splicing factor 1 splicing factor 1 uncharacterized LOC125589775 splicing factor 1 splicing factor 1 splicing factor 1 uncharacterized LOC102603874 uncharacterized LOC102625244 atrophin-1 uncharacterized LOC107793768 uncharacterized LOC107783052
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 10
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00230 Purine metabolism 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00230 Purine metabolism 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823058 100777227 102668428 101266547 4344412 103874905 100246694 7483260 7461374 11442475 123169693 123147715 123407899 121220152 107938377 125589775 106410352 8068548 102578234 102603874 102625244 100834620 107793768 107783052
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