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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107789285   protein REDUCED CHLOROPLAST COVERAGE 1 
 nta-r.1   107821736   protein REDUCED CHLOROPLAST COVERAGE 1 
 sly-u.5   101267609   protein REDUCED CHLOROPLAST COVERAGE 1 
 sly-u.5   101251035   protein REDUCED CHLOROPLAST COVERAGE 1-like 
 sot-r.1   102602924   protein TSS 
 sot-r.1   102581004   protein TSS-like 
 ath-u.5   AT1G01320   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100808136   protein TSS 
 gma-u.5   100784117   protein TSS 
 bra-r.6   103844641   protein TSS 
 vvi-u.5   100263581   protein REDUCED CHLOROPLAST COVERAGE 1 
 ppo-u.5   7486769   protein REDUCED CHLOROPLAST COVERAGE 1 
 ppo-u.5   7457397   protein REDUCED CHLOROPLAST COVERAGE 1 
 mtr-u.5   25500695   protein TSS 
 ghi-r.1   107900948   protein TSS 
 ghi-r.1   107938163   protein TSS 
 ghi-r.1   107945864   protein TSS 
 bna-r.1   106398058   protein REDUCED CHLOROPLAST COVERAGE 1 
 bna-r.1   106370880   protein REDUCED CHLOROPLAST COVERAGE 1 
 cit-r.1   102621342   protein REDUCED CHLOROPLAST COVERAGE 1 
 osa-u.5   4343046   protein REDUCED CHLOROPLAST COVERAGE 1 
 tae-r.2   123062132   protein TSS 
 tae-r.2   123062134   protein TSS 
 tae-r.2   123070854   protein TSS 
 hvu-r.1   123444470   protein TSS-like 
 hvu-r.1   123444471   protein TSS-like 
 sbi-r.1   8059721   protein TSS 
 bdi-r.1   100826321   protein TSS 

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Top 50 coexpressed genes to 107789285 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107789285 (nta-r.1 coexpression data)

CoexMap"107789285"


ntaLOC107789285 | Entrez gene ID : 107789285      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa tae hvu sbi bdi zma cre
Paralog 2 2 2 1 2 1 1 2 1 3 2 1 1 3 2 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006996 [list] [network] organelle organization  (1641 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (8458 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016466544.2 [sequence] [blastp]
XP_016466545.2 [sequence] [blastp]
XP_016466546.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  pero 1,  cysk 1,  E.R._vacu 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_016466544.2)
nucl 4,  cyto 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  pero 1,  cysk 1,  E.R._vacu 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_016466545.2)
nucl 4,  cyto 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  pero 1,  cysk 1,  E.R._vacu 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_016466546.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016466544.2)
other 9  (predict for XP_016466545.2)
other 9  (predict for XP_016466546.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107789285
nta-r.1
for
107821736
sly-u.5
for
101267609
sly-u.5
for
101251035
sot-r.1
for
102602924
sot-r.1
for
102581004
ath-u.5
for
AT1G01320
gma-u.5
for
100808136
gma-u.5
for
100784117
bra-r.6
for
103844641
vvi-u.5
for
100263581
ppo-u.5
for
7486769
ppo-u.5
for
7457397
mtr-u.5
for
25500695
ghi-r.1
for
107900948
ghi-r.1
for
107938163
ghi-r.1
for
107945864
bna-r.1
for
106398058
bna-r.1
for
106370880
cit-r.1
for
102621342
osa-u.5
for
4343046
tae-r.2
for
123062132
tae-r.2
for
123062134
tae-r.2
for
123070854
hvu-r.1
for
123444470
hvu-r.1
for
123444471
sbi-r.1
for
8059721
bdi-r.1
for
100826321


Ortholog ID: 7048
Species nta nta sly sly sot sot ath gma gma bra vvi ppo ppo mtr ghi ghi ghi bna bna cit osa tae tae tae hvu hvu sbi bdi
Symbol LOC107789285 LOC107821736 LOC101267609 LOC101251035 LOC102602924 LOC102581004 AT1G01320 LOC100808136 LOC100784117 LOC103844641 LOC100263581 LOC7486769 LOC7457397 LOC25500695 LOC107900948 LOC107938163 LOC107945864 LOC106398058 LOC106370880 LOC102621342 LOC4343046 LOC123062132 LOC123079246 LOC123079247 LOC123444470 LOC123444471 LOC8059721 LOC100826321
Function* protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1-like protein TSS protein TSS-like Tetratricopeptide repeat (TPR)-like superfamily protein protein TSS protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein TSS protein TSS protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein REDUCED CHLOROPLAST COVERAGE 1 protein TSS protein TSS protein TSS protein TSS-like protein TSS-like protein TSS protein TSS
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107789285 107821736 101267609 101251035 102602924 102581004 839293 100808136 100784117 103844641 100263581 7486769 7457397 25500695 107900948 107938163 107945864 106398058 106370880 102621342 4343046 123062132 123079246 123079247 123444470 123444471 8059721 100826321
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