ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107797391	transketolase, chloroplastic
sly-u.5	101245299	transketolase, chloroplastic
sly-u.5	101251315	transketolase, chloroplastic-like
sly-u.5	101265735	transketolase, chloroplastic-like
ath-u.5	AT2G45290	Transketolase
ath-u.5	AT3G60750	Transketolase
gma-u.5	100818028	transketolase, chloroplastic
gma-u.5	100805786	transketolase, chloroplastic
gma-u.5	100781676	transketolase, chloroplastic
vvi-u.5	100248004	transketolase, chloroplastic
vvi-u.5	100262551	transketolase, chloroplastic
ppo-u.5	7453964	transketolase, chloroplastic
ppo-u.5	18105204	transketolase, chloroplastic
mtr-u.5	11424367	transketolase, chloroplastic
mtr-u.5	11423341	transketolase, chloroplastic
osa-u.5	4340025	transketolase, chloroplastic
osa-u.5	4335330	transketolase, chloroplastic
zma-u.5	103646666	transketolase, chloroplastic-like
zma-u.5	103640190	transketolase, chloroplastic
zma-u.5	100279513	uncharacterized LOC100279513

Top 50 coexpressed genes to 107797391 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107797391 (nta-r.1 coexpression data)

CoexMap"107797391"

[Cytoscape]

Annotation

functional annotation

KEGG

nta00030 [list] [network] Pentose phosphate pathway (111 genes)

nta00710 [list] [network] Carbon fixation by Calvin cycle (163 genes)

nta01200 [list] [network] Carbon metabolism (563 genes)

nta01230 [list] [network] Biosynthesis of amino acids (462 genes)

GO BP

GO:0006098 [list] [network] pentose-phosphate shunt

(41 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(1509 genes)

IEA

GO MF

GO:0004802 [list] [network] transketolase activity

(6 genes)

IEA

Protein

XP_016475760.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_016475760.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_016475760.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107797391	sly-u.5 for 101245299	sly-u.5 for 101251315	sly-u.5 for 101265735	ath-u.5 for AT2G45290	ath-u.5 for AT3G60750	gma-u.5 for 100818028	gma-u.5 for 100805786	gma-u.5 for 100781676	vvi-u.5 for 100248004	vvi-u.5 for 100262551	ppo-u.5 for 7453964	ppo-u.5 for 18105204	mtr-u.5 for 11424367	mtr-u.5 for 11423341	osa-u.5 for 4340025	osa-u.5 for 4335330	zma-u.5 for 103646666	zma-u.5 for 103640190	zma-u.5 for 100279513

Ortholog

Ortholog ID: 2545

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase, chloroplastic

transketolase, chloroplastic-like

Transketolase

transketolase, chloroplastic

transketolase-1, chloroplastic

transketolase, chloroplastic

transketolase-1, chloroplastic-like

transketolase-2, chloroplastic

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00030	Pentose phosphate pathway	4
nta01200	Carbon metabolism	4
nta01230	Biosynthesis of amino acids	4
nta00710	Carbon fixation by Calvin cycle	3
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	9
sly01230	Biosynthesis of amino acids	6
sly00190	Oxidative phosphorylation	6
sly00710	Carbon fixation by Calvin cycle	5
sly00020	Citrate cycle (TCA cycle)	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	9
sly00710	Carbon fixation by Calvin cycle	7
sly00195	Photosynthesis	6
sly00630	Glyoxylate and dicarboxylate metabolism	3
sly00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	7
sot01230	Biosynthesis of amino acids	7
sot00010	Glycolysis / Gluconeogenesis	4
sot00030	Pentose phosphate pathway	4
sot00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	10
ath01230	Biosynthesis of amino acids	7
ath00010	Glycolysis / Gluconeogenesis	6
ath00620	Pyruvate metabolism	4
ath01210	2-Oxocarboxylic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	6
ath01200	Carbon metabolism	4
ath00030	Pentose phosphate pathway	3
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
ath01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	16
gma01230	Biosynthesis of amino acids	11
gma00030	Pentose phosphate pathway	9
gma00710	Carbon fixation by Calvin cycle	8
gma00010	Glycolysis / Gluconeogenesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	11
gma00710	Carbon fixation by Calvin cycle	9
gma00630	Glyoxylate and dicarboxylate metabolism	4
gma00030	Pentose phosphate pathway	3
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	8
bra00030	Pentose phosphate pathway	5
bra00010	Glycolysis / Gluconeogenesis	4
bra00260	Glycine, serine and threonine metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	11
bra01230	Biosynthesis of amino acids	9
bra00710	Carbon fixation by Calvin cycle	7
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra00010	Glycolysis / Gluconeogenesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00940	Phenylpropanoid biosynthesis	3
vvi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	3
vvi01240	Biosynthesis of cofactors	3
vvi01200	Carbon metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	9
ppo00710	Carbon fixation by Calvin cycle	6
ppo01230	Biosynthesis of amino acids	6
ppo00030	Pentose phosphate pathway	4
ppo00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr01200	Carbon metabolism	3
mtr00190	Oxidative phosphorylation	2
mtr00195	Photosynthesis	2
mtr00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	9
mtr01200	Carbon metabolism	8
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00030	Pentose phosphate pathway	4
mtr01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi01200	Carbon metabolism	7
ghi01230	Biosynthesis of amino acids	7
ghi00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi01200	Carbon metabolism	7
ghi01230	Biosynthesis of amino acids	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	10
bna00030	Pentose phosphate pathway	6
bna00710	Carbon fixation by Calvin cycle	6
bna01230	Biosynthesis of amino acids	6
bna00010	Glycolysis / Gluconeogenesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	8
bna00030	Pentose phosphate pathway	6
bna00710	Carbon fixation by Calvin cycle	6
bna01230	Biosynthesis of amino acids	6
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00030	Pentose phosphate pathway	2
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2
cit01230	Biosynthesis of amino acids	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	7
osa01230	Biosynthesis of amino acids	6
osa00710	Carbon fixation by Calvin cycle	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	6
osa01200	Carbon metabolism	6
osa01230	Biosynthesis of amino acids	4
osa00710	Carbon fixation by Calvin cycle	3
osa00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	4
zma00710	Carbon fixation by Calvin cycle	4
zma01200	Carbon metabolism	4
zma00030	Pentose phosphate pathway	3
zma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	5
zma04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	12
tae01200	Carbon metabolism	11
tae00710	Carbon fixation by Calvin cycle	8
tae00920	Sulfur metabolism	6
tae01320	Sulfur cycle	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	11
tae01200	Carbon metabolism	7
tae00710	Carbon fixation by Calvin cycle	6
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
tae00030	Pentose phosphate pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	10
sbi00785	Lipoic acid metabolism	5
sbi00030	Pentose phosphate pathway	5
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00020	Citrate cycle (TCA cycle)	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi01230	Biosynthesis of amino acids	4
sbi04016	MAPK signaling pathway - plant	3
sbi04075	Plant hormone signal transduction	3
sbi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	7
bdi00710	Carbon fixation by Calvin cycle	5
bdi01230	Biosynthesis of amino acids	5
bdi00030	Pentose phosphate pathway	3
bdi00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00710	Carbon fixation by Calvin cycle	8
cre01200	Carbon metabolism	8
cre00195	Photosynthesis	4
cre00630	Glyoxylate and dicarboxylate metabolism	3
cre00190	Oxidative phosphorylation	3

Expression

Expression pattern

Entrez Gene ID^*

107785488

101265735

101245299

102603108

102588555

825246

819137

100818028

100781676

103862864

103841917

100262551

100248004

7453964

11423341

11424367

121210881

107941756

111215158

106450752

102622121

4340025

4335330

103640190

103646666

123088174

123165497

123429329

8072707

8085774

100837200

100841910

5727287

The preparation time of this page was 0.1 [sec].


Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	3	2	3	2	2	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107797391 (nta-r.1 coexpression data)

Top 50 enrichment test to 107797391 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**