ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107824717	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107765935	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107794577	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107799939	heterogeneous nuclear ribonucleoprotein 1-like
sly-u.5	101265253	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101263479	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102605451	heterogeneous nuclear ribonucleoprotein A1-like
sot-r.1	102605795	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102579349	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	AT3G13224	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G40490	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	113001701	glycine-rich RNA-binding protein 3, mitochondrial
gma-u.5	100814490	heterogeneous nuclear ribonucleoprotein A3
gma-u.5	100813165	glycine-rich RNA-binding protein 3, mitochondrial
bra-r.6	103863998	heterogeneous nuclear ribonucleoprotein A3 homolog 2
bra-r.6	103849754	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100265210	heterogeneous nuclear ribonucleoprotein 27C-like
vvi-u.5	100246013	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100240900	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7485125	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7496843	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11427003	heterogeneous nuclear ribonucleoprotein A1
mtr-u.5	25495139	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954751	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107954030	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107950061	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106377523	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106446166	heterogeneous nuclear ribonucleoprotein A1-like 2
bna-r.1	106391017	heterogeneous nuclear ribonucleoprotein 1-like
cit-r.1	102618321	uncharacterized LOC102618321
osa-u.5	4345254	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4345910	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100217268	uncharacterized LOC100217268
zma-u.5	103645111	glycine-rich RNA-binding protein 3, mitochondrial
zma-u.5	103639292	heterogeneous nuclear ribonucleoprotein 1-like
tae-r.2	123154110	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123145388	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123128276	RNA-binding protein Musashi homolog 2
hvu-r.1	123406148	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123409642	heterogeneous nuclear ribonucleoprotein A0-like
sbi-r.1	8084829	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100833186	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100828715	heterogeneous nuclear ribonucleoprotein A0

Top 50 coexpressed genes to 107824717 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107824717 (nta-r.1 coexpression data)

CoexMap"107824717"

[Cytoscape]

Annotation

functional annotation

KEGG

nta03040 [list] [network] Spliceosome (402 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(3522 genes)

IEA

GO CC

GO:0005654 [list] [network] nucleoplasm	(321 genes)	IEA
GO:0000785 [list] [network] chromatin	(386 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(2607 genes)

IEA

Protein

XP_016507040.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, extr 1, pero 1

(predict for XP_016507040.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016507040.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107824717	nta-r.1 for 107765935	nta-r.1 for 107794577	nta-r.1 for 107799939	sly-u.5 for 101265253	sly-u.5 for 101263479	sot-r.1 for 102605451	sot-r.1 for 102605795	sot-r.1 for 102579349	ath-u.5 for AT3G13224	ath-u.5 for AT5G40490	gma-u.5 for 113001701	gma-u.5 for 100814490	gma-u.5 for 100813165	bra-r.6 for 103863998	bra-r.6 for 103849754	vvi-u.5 for 100265210	vvi-u.5 for 100246013	vvi-u.5 for 100240900	ppo-u.5 for 7485125	ppo-u.5 for 7496843	mtr-u.5 for 11427003	mtr-u.5 for 25495139	ghi-r.1 for 107954751	ghi-r.1 for 107954030	ghi-r.1 for 107950061	bna-r.1 for 106377523	bna-r.1 for 106446166	bna-r.1 for 106391017	cit-r.1 for 102618321	osa-u.5 for 4345254	osa-u.5 for 4345910	zma-u.5 for 100217268	zma-u.5 for 103645111	zma-u.5 for 103639292	tae-r.2 for 123154110	tae-r.2 for 123145388	tae-r.2 for 123128276	hvu-r.1 for 123406148	hvu-r.1 for 123409642	sbi-r.1 for 8084829	bdi-r.1 for 100833186	bdi-r.1 for 100828715

Ortholog

Ortholog ID: 2811

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein 1-like

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein A1-like

heterogeneous nuclear ribonucleoprotein 1

cold-inducible RNA-binding protein-like

RNA-binding (RRM/RBD/RNP motifs) family protein

glycine-rich RNA-binding protein 3, mitochondrial

heterogeneous nuclear ribonucleoprotein A3 homolog 2

RNA recognition motif-containing protein

heterogeneous nuclear ribonucleoprotein A3 homolog 2

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein 27C-like

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein A1

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein A3 homolog 1

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein A1-like 2

heterogeneous nuclear ribonucleoprotein 1-like

uncharacterized LOC102618321

heterogeneous nuclear ribonucleoprotein 1

uncharacterized LOC100217268

glycine-rich RNA-binding protein 3, mitochondrial

heterogeneous nuclear ribonucleoprotein 1-like

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein 27C

heterogeneous nuclear ribonucleoprotein 1-like

heterogeneous nuclear ribonucleoprotein A0-like

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein A0

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	10
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03015	mRNA surveillance pathway	3
sot00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	8
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03040	Spliceosome	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo03050	Proteasome	3
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	12
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	9
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	9
bna03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	5
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2
osa03040	Spliceosome	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8
zma03015	mRNA surveillance pathway	5
zma03013	Nucleocytoplasmic transport	2
zma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03060	Protein export	5
bdi04141	Protein processing in endoplasmic reticulum	4
bdi03040	Spliceosome	3
bdi04142	Lysosome	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi03040	Spliceosome	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi01200	Carbon metabolism	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

107824717

107799939

107830030

101265253

101263479

102605451

102579349

102606088

820515

834047

100813165

100801373

100793209

103863998

103849754

100265210

100246013

100240900

7485125

7496843

11427003

25495139

107934006

107916320

107892251

106377523

106446166

111202413

102618321

4345254

4345910

100217268

103645111

103639292

123165488

123138129

123156008

123406148

123409642

8084829

100833186

100828715

The preparation time of this page was 0.1 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	2	3	2	2	3	3	1	2	3	3	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107824717 (nta-r.1 coexpression data)

Top 50 enrichment test to 107824717 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**