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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909825   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ghi-r.1   107886452   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ath-u.5   AT1G27900   RNA helicase family protein 
 bra-r.6   103835367   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bna-r.1   106389571   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bna-r.1   111199777   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 cit-r.1   102622684   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 gma-u.5   100793583   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 vvi-u.5   100245855   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ppo-u.5   7477037   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 mtr-u.5   25501723   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sly-u.5   101264721   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sot-r.1   102578166   probable pre-mRNA-splicing factor ATP-dependent RNA helicase 
 nta-r.1   107765958   putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 nta-r.1   107775248   putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 osa-u.5   4350353   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 zma-u.5   103638000   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 tae-r.2   123091106   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 tae-r.2   123086872   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 tae-r.2   123096108   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 hvu-r.1   123447760   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sbi-r.1   8064050   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bdi-r.1   100831991   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 cre-r.1   CHLRE_12g520150v5   uncharacterized protein 

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Top 50 coexpressed genes to 107909825 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909825 (ghi-r.1 coexpression data)

CoexMap"107909825"


ghiLOC107909825 | Entrez gene ID : 107909825    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (21132 genes)  IEA  
GO MF
GO:0004386 [list] [network] helicase activity  (292 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (974 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016692982.2 [sequence] [blastp]
XP_016692983.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  cyto_mito 4,  chlo 2,  nucl 1  (predict for XP_016692982.2)
cyto 5,  nucl 2,  chlo 1,  E.R. 1,  cysk 1,  golg 1  (predict for XP_016692983.2)
Subcellular
localization
TargetP
mito 2  (predict for XP_016692982.2)
other 8,  chlo 4  (predict for XP_016692983.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909825
ghi-r.1
for
107886452
ath-u.5
for
AT1G27900
bra-r.6
for
103835367
bna-r.1
for
106389571
bna-r.1
for
111199777
cit-r.1
for
102622684
gma-u.5
for
100793583
vvi-u.5
for
100245855
ppo-u.5
for
7477037
mtr-u.5
for
25501723
sly-u.5
for
101264721
sot-r.1
for
102578166
nta-r.1
for
107765958
nta-r.1
for
107775248
osa-u.5
for
4350353
zma-u.5
for
103638000
tae-r.2
for
123091106
tae-r.2
for
123086872
tae-r.2
for
123096108
hvu-r.1
for
123447760
sbi-r.1
for
8064050
bdi-r.1
for
100831991
cre-r.1
for
CHLRE_12g520150v5


Ortholog ID: 11069
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107909825 LOC107886452 AT1G27900 LOC103835367 LOC106389571 LOC111199777 LOC102622684 LOC100793583 LOC100245855 LOC7477037 LOC25501723 LOC101264721 LOC102578166 LOC107765958 LOC107775248 LOC4350353 LOC103638000 LOC123091106 LOC123086872 LOC123096108 LOC123447760 LOC8064050 LOC100831991 CHLRE_12g520150v5
Function* probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 RNA helicase family protein probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 8
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03440 Homologous recombination 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03015 mRNA surveillance pathway 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107909825 107886452 839683 103835367 106389571 111199777 102622684 100793583 100245855 7477037 25501723 101264721 102578166 107765958 107775248 4350353 103638000 123091106 123086872 123096108 123447760 8064050 100831991 5722598
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