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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123096108   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 tae-r.2   123086872   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 tae-r.2   123091106   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 hvu-r.1   123447760   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bdi-r.1   100831991   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 osa-u.5   4350353   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 zma-u.5   103638000   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sbi-r.1   8064050   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ath-u.5   AT1G27900   RNA helicase family protein 
 gma-u.5   100793583   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sly-u.5   101264721   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bra-r.6   103835367   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 vvi-u.5   100245855   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ppo-u.5   7477037   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 mtr-u.5   25501723   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ghi-r.1   107886452   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ghi-r.1   107909825   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bna-r.1   106389571   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 bna-r.1   111199777   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sot-r.1   102578166   probable pre-mRNA-splicing factor ATP-dependent RNA helicase 
 cit-r.1   102622684   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 nta-r.1   107775248   putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 nta-r.1   107765958   putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 cre-r.1   CHLRE_12g520150v5   uncharacterized protein 

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Top 50 coexpressed genes to 123096108 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123096108 (tae-r.2 coexpression data)

CoexMap"123096108"


taeLOC123096108 | Entrez gene ID : 123096108    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03040 [list] [network] Spliceosome (1516 genes)
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (22726 genes)  IEA  
GO MF
GO:0004386 [list] [network] helicase activity  (453 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (7858 genes)  IEA  
Protein XP_044373647.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 2,  chlo 2,  plas 1,  mito_plas 1  (predict for XP_044373647.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for XP_044373647.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123096108
tae-r.2
for
123086872
tae-r.2
for
123091106
hvu-r.1
for
123447760
bdi-r.1
for
100831991
osa-u.5
for
4350353
zma-u.5
for
103638000
sbi-r.1
for
8064050
ath-u.5
for
AT1G27900
gma-u.5
for
100793583
sly-u.5
for
101264721
bra-r.6
for
103835367
vvi-u.5
for
100245855
ppo-u.5
for
7477037
mtr-u.5
for
25501723
ghi-r.1
for
107886452
ghi-r.1
for
107909825
bna-r.1
for
106389571
bna-r.1
for
111199777
sot-r.1
for
102578166
cit-r.1
for
102622684
nta-r.1
for
107775248
nta-r.1
for
107765958
cre-r.1
for
CHLRE_12g520150v5


Ortholog ID: 11069
Species tae tae tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123096108 LOC123086872 LOC123091106 LOC123447760 LOC100831991 LOC4350353 LOC103638000 LOC8064050 AT1G27900 LOC100793583 LOC101264721 LOC103835367 LOC100245855 LOC7477037 LOC25501723 LOC107886452 LOC107909825 LOC106389571 LOC111199777 LOC102578166 LOC102622684 LOC107775248 LOC107765958 CHLRE_12g520150v5
Function* probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 RNA helicase family protein probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03015 mRNA surveillance pathway 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03440 Homologous recombination 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 8
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123096108 123086872 123091106 123447760 100831991 4350353 103638000 8064050 839683 100793583 101264721 103835367 100245855 7477037 25501723 107886452 107909825 106389571 111199777 102578166 102622684 107775248 107765958 5722598
The preparation time of this page was 1.7 [sec].