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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107912309   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   121224135   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   107946005   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ghi-r.1   107924444   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ath-u.5   GUN1   s uncoupled 1 
 bra-r.6   103867877   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 bra-r.6   103865140   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 bna-r.1   106451394   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 bna-r.1   125608271   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 
 bna-r.1   106382046   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 
 cit-r.1   102611354   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 gma-u.5   100794695   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 gma-u.5   100778991   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 vvi-u.5   100255579   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 ppo-u.5   7481408   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 ppo-u.5   7495210   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 mtr-u.5   11421148   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 mtr-u.5   11420621   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 sly-u.5   101265032   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 sot-r.1   102602193   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 nta-r.1   107801966   pentatricopeptide repeat-containing protein GUN1, chloroplastic-like 
 nta-r.1   107764668   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 osa-u.5   4352523   pentatricopeptide repeat-containing protein GUN1, chloroplastic 
 zma-u.5   103639469   pentatricopeptide repeat-containing protein, chloroplastic-like 
 tae-r.2   123102547   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 tae-r.2   123110734   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 tae-r.2   123119732   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 hvu-r.1   123399971   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 sbi-r.1   8068842   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 bdi-r.1   100822908   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 

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Top 50 coexpressed genes to 107912309 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107912309 (ghi-r.1 coexpression data)

CoexMap"107912309"


ghiLOC107912309 | Entrez gene ID : 107912309    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 2 1 2 2 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031930 [list] [network] mitochondria-nucleus signaling pathway  (21 genes)  IEA  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (25 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016695903.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016695903.2)
Subcellular
localization
TargetP
chlo 9,  other 4  (predict for XP_016695903.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107912309
ghi-r.1
for
121224135
ghi-r.1
for
107946005
ghi-r.1
for
107924444
ath-u.5
for
GUN1
bra-r.6
for
103867877
bra-r.6
for
103865140
bna-r.1
for
106451394
bna-r.1
for
125608271
bna-r.1
for
106382046
cit-r.1
for
102611354
gma-u.5
for
100794695
gma-u.5
for
100778991
vvi-u.5
for
100255579
ppo-u.5
for
7481408
ppo-u.5
for
7495210
mtr-u.5
for
11421148
mtr-u.5
for
11420621
sly-u.5
for
101265032
sot-r.1
for
102602193
nta-r.1
for
107801966
nta-r.1
for
107764668
osa-u.5
for
4352523
zma-u.5
for
103639469
tae-r.2
for
123102547
tae-r.2
for
123110734
tae-r.2
for
123119732
hvu-r.1
for
123399971
sbi-r.1
for
8068842
bdi-r.1
for
100822908


Ortholog ID: 6820
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107912309 LOC121224135 LOC107946005 GUN1 LOC103867877 LOC103865140 LOC125608271 LOC106380478 LOC106379787 LOC102611354 LOC100794695 LOC100778991 LOC100255579 LOC7481408 LOC7495210 LOC11421148 LOC11420621 LOC101265032 LOC102602193 LOC107801966 LOC107764668 LOC4352523 LOC103639469 LOC123102547 LOC123110734 LOC123119732 LOC123399971 LOC8068842 LOC100822908
Function* pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic s uncoupled 1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic-like pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic-like pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic-like pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein GUN1, chloroplastic pentatricopeptide repeat-containing protein, chloroplastic-like pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic pentatricopeptide repeat-containing protein At2g31400, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00460 Cyanoamino acid metabolism 3
bna00500 Starch and sucrose metabolism 3
bna00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 2
sot00020 Citrate cycle (TCA cycle) 2
sot00620 Pyruvate metabolism 2
sot00785 Lipoic acid metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta04146 Peroxisome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 5
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107912309 121224135 107946005 817698 103867877 103865140 125608271 106380478 106379787 102611354 100794695 100778991 100255579 7481408 7495210 11421148 11420621 101265032 102602193 107801966 107764668 4352523 103639469 123102547 123110734 123119732 123399971 8068842 100822908
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