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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922226   F-box protein At1g47056 
 ghi-r.1   107958151   F-box protein At1g47056 
 ghi-r.1   107905601   F-box protein At1g47056 
 ghi-r.1   107918075   F-box protein At1g47056 
 ath-u.5   VFB2   VIER F-box protein 2 
 ath-u.5   VFB3   VIER F-box protein 3 
 ath-u.5   SKIP2   SKP1/ASK1-interacting protein 2 
 bra-r.6   103829524   F-box protein SKIP2 
 bra-r.6   103837742   F-box protein SKIP2 
 bra-r.6   103868721   F-box protein At1g47056 
 bna-r.1   106390332   F-box protein SKIP2-like 
 bna-r.1   125586972   F-box protein At1g47056-like 
 bna-r.1   106360724   F-box protein SKIP2 
 cit-r.1   102622449   F-box protein At1g47056 
 cit-r.1   102629556   F-box protein SKIP2 
 gma-u.5   100817022   F-box protein SKIP2 
 gma-u.5   100788163   F-box protein At1g47056 
 vvi-u.5   100250708   F-box protein At1g47056 
 vvi-u.5   100852716   F-box protein SKIP2 
 vvi-u.5   100259063   F-box protein At1g47056 
 ppo-u.5   7476400   F-box protein SKIP2 
 ppo-u.5   18104843   F-box protein At1g47056 
 ppo-u.5   7472683   F-box protein At1g47056 
 mtr-u.5   11420387   F-box protein At1g47056 
 mtr-u.5   112421285   F-box protein SKIP2 
 sly-u.5   101247773   F-box protein SKIP2 
 sly-u.5   101246998   F-box protein SKIP2-like 
 sly-u.5   101245757   F-box protein At1g47056 
 sot-r.1   102583494   F-box protein SKIP2-like 
 sot-r.1   102585400   F-box protein At1g47056-like 
 sot-r.1   102605238   F-box protein At1g47056-like 
 nta-r.1   142170645   F-box protein At1g47056-like 
 nta-r.1   107804793   F-box protein At1g47056-like 
 nta-r.1   107779658   F-box protein At1g47056-like 
 osa-u.5   4336338   F-box protein At1g47056 
 osa-u.5   4346401   F-box protein At1g47056 
 zma-u.5   103632351   F-box protein At1g47056 
 zma-u.5   100284044   uncharacterized LOC100284044 
 zma-u.5   100279556   uncharacterized LOC100279556 
 tae-r.2   123111486   F-box protein At1g47056 
 tae-r.2   123045968   F-box protein At1g47056 
 tae-r.2   123053845   F-box protein At1g47056 
 hvu-r.1   123452403   F-box protein At1g47056-like 
 hvu-r.1   123427190   F-box protein At1g47056-like 
 sbi-r.1   110436572   F-box protein At1g47056-like 
 sbi-r.1   8063875   F-box protein At1g47056 
 bdi-r.1   100846537   F-box protein At1g47056 
 bdi-r.1   100833356   F-box protein At1g47056 
 cre-r.1   CHLRE_01g047650v5   uncharacterized protein 

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Top 50 coexpressed genes to 107922226 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922226 (ghi-r.1 coexpression data)

CoexMap"107922226"


ghiLOC107922226 | Entrez gene ID : 107922226    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 2 3 3 2 3 3 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (153 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (155 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016707632.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  chlo_mito 3,  mito 2  (predict for XP_016707632.2)
Subcellular
localization
TargetP
mito 7  (predict for XP_016707632.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922226
ghi-r.1
for
107958151
ghi-r.1
for
107905601
ghi-r.1
for
107918075
ath-u.5
for
VFB2
ath-u.5
for
VFB3
ath-u.5
for
SKIP2
bra-r.6
for
103829524
bra-r.6
for
103837742
bra-r.6
for
103868721
bna-r.1
for
106390332
bna-r.1
for
125586972
bna-r.1
for
106360724
cit-r.1
for
102622449
cit-r.1
for
102629556
gma-u.5
for
100817022
gma-u.5
for
100788163
vvi-u.5
for
100250708
vvi-u.5
for
100852716
vvi-u.5
for
100259063
ppo-u.5
for
7476400
ppo-u.5
for
18104843
ppo-u.5
for
7472683
mtr-u.5
for
11420387
mtr-u.5
for
112421285
sly-u.5
for
101247773
sly-u.5
for
101246998
sly-u.5
for
101245757
sot-r.1
for
102583494
sot-r.1
for
102585400
sot-r.1
for
102605238
nta-r.1
for
142170645
nta-r.1
for
107804793
nta-r.1
for
107779658
osa-u.5
for
4336338
osa-u.5
for
4346401
zma-u.5
for
103632351
zma-u.5
for
100284044
zma-u.5
for
100279556
tae-r.2
for
123111486
tae-r.2
for
123045968
tae-r.2
for
123053845
hvu-r.1
for
123452403
hvu-r.1
for
123427190
sbi-r.1
for
110436572
sbi-r.1
for
8063875
bdi-r.1
for
100846537
bdi-r.1
for
100833356
cre-r.1
for
CHLRE_01g047650v5


Ortholog ID: 1465
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107922226 LOC107905601 LOC107931670 VFB2 VFB3 VFB1 LOC103829524 LOC103837742 LOC103868721 LOC125586972 LOC106405922 LOC106453799 LOC102622449 LOC102629556 LOC100807711 LOC100779319 LOC100250708 LOC100852716 LOC100259063 LOC7476400 LOC18104843 LOC7472683 LOC11420387 LOC112421285 LOC101247773 LOC101246998 LOC101245757 LOC102585400 LOC102605238 LOC107062868 LOC142170645 LOC107779658 LOC107782164 LOC4336338 LOC4346401 LOC103632351 LOC100284044 LOC100279556 LOC123053845 LOC123103293 LOC123120677 LOC123452403 LOC123427190 LOC110436572 LOC8063875 LOC100846537 LOC100833356 CHLRE_01g047650v5
Function* F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 VIER F-box protein 2 VIER F-box protein 3 VIER F-box protein 1 F-box protein SKIP2 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056-like F-box/LRR-repeat protein 16 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein SKIP2 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein SKIP2 F-box protein SKIP2-like F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like putative F-box/LRR-repeat protein 8 F-box protein At1g47056-like F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 uncharacterized LOC100284044 uncharacterized LOC100279556 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03272 Virion - Hepatitis viruses 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00051 Fructose and mannose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00053 Ascorbate and aldarate metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01240 Biosynthesis of cofactors 3
zma01250 Biosynthesis of nucleotide sugars 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
bdi00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107922226 107905601 107931670 824170 826171 841121 103829524 103837742 103868721 125586972 106405922 106453799 102622449 102629556 100807711 100779319 100250708 100852716 100259063 7476400 18104843 7472683 11420387 112421285 101247773 101246998 101245757 102585400 102605238 107062868 142170645 107779658 107782164 4336338 4346401 103632351 100284044 100279556 123053845 123103293 123120677 123452403 123427190 110436572 8063875 100846537 100833356 5715688
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