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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107932540   E3 ubiquitin-protein ligase APD2 
 ghi-r.1   107931635   E3 ubiquitin-protein ligase APD2 
 ghi-r.1   107951033   E3 ubiquitin-protein ligase APD2 
 ghi-r.1   107958061   E3 ubiquitin-protein ligase APD2 
 ath-u.5   APD1   RING/U-box superfamily protein 
 ath-u.5   APD2   RING/U-box superfamily protein 
 bra-r.6   103855419   E3 ubiquitin-protein ligase APD2 
 bna-r.1   106438161   E3 ubiquitin-protein ligase APD1-like 
 bna-r.1   BNAC03G00260D   E3 ubiquitin-protein ligase APD2 
 cit-r.1   102608051   E3 ubiquitin-protein ligase APD2 
 cit-r.1   102622796   E3 ubiquitin-protein ligase APD2-like 
 gma-u.5   100777075   E3 ubiquitin-protein ligase APD1 
 gma-u.5   100777141   E3 ubiquitin-protein ligase APD2 
 gma-u.5   100791057   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100245723   E3 ubiquitin-protein ligase APD1 
 vvi-u.5   100247198   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100248821   E3 ubiquitin-protein ligase APD2 
 ppo-u.5   7466072   E3 ubiquitin-protein ligase APD2 
 sly-u.5   101252132   E3 ubiquitin-protein ligase APD4 
 sly-u.5   101252808   E3 ubiquitin-protein ligase APD2 
 sot-r.1   102599744   E3 ubiquitin-protein ligase MYLIP-A 
 sot-r.1   102603607   uncharacterized LOC102603607 
 nta-r.1   107831062   E3 ubiquitin-protein ligase APD2 
 nta-r.1   107803573   E3 ubiquitin-protein ligase APD1 
 cre-r.1   CHLRE_01g000750v5   uncharacterized protein 
 cre-r.1   CHLRE_16g649150v5   uncharacterized protein 

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Top 50 coexpressed genes to 107932540 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107932540 (ghi-r.1 coexpression data)

CoexMap"107932540"


ghiLOC107932540 | Entrez gene ID : 107932540    
Species ghi ath bra bna cit gma vvi ppo sly sot nta cre zma sbi tae mtr osa hvu bdi
Paralog 4 2 1 2 2 3 3 1 2 2 2 2 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007049 [list] [network] cell cycle  (835 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
Protein XP_016720070.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  cyto 1,  plas 1,  extr 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_016720070.2)
Subcellular
localization
TargetP
other 7  (predict for XP_016720070.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107932540
ghi-r.1
for
107931635
ghi-r.1
for
107951033
ghi-r.1
for
107958061
ath-u.5
for
APD1
ath-u.5
for
APD2
bra-r.6
for
103855419
bna-r.1
for
106438161
bna-r.1
for
BNAC03G00260D
cit-r.1
for
102608051
cit-r.1
for
102622796
gma-u.5
for
100777075
gma-u.5
for
100777141
gma-u.5
for
100791057
vvi-u.5
for
100245723
vvi-u.5
for
100247198
vvi-u.5
for
100248821
ppo-u.5
for
7466072
sly-u.5
for
101252132
sly-u.5
for
101252808
sot-r.1
for
102599744
sot-r.1
for
102603607
nta-r.1
for
107831062
nta-r.1
for
107803573
cre-r.1
for
CHLRE_01g000750v5
cre-r.1
for
CHLRE_16g649150v5


Ortholog ID: 1842
Species ghi ghi ghi ath bra bra bna bna cit cit gma gma gma vvi vvi vvi ppo sly sly sot sot nta nta cre cre
Symbol LOC107958061 LOC107892564 LOC107906620 APD2 LOC103855419 LOC103857765 LOC106438161 LOC106358274 LOC102608051 LOC102622796 LOC100777075 LOC100791057 LOC100794488 LOC100245723 LOC100247198 LOC100258653 LOC7466072 LOC101252132 LOC101252808 LOC102599744 LOC102603607 LOC107831062 LOC107831645 CHLRE_01g000750v5 CHLRE_16g649150v5
Function* E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 RING/U-box superfamily protein E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1-like E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2-like E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD4 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase MYLIP-A uncharacterized LOC102603607 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 5
sot01250 Biosynthesis of nucleotide sugars 5
sot00052 Galactose metabolism 3
sot00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
cre00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107958061 107892564 107906620 831860 103855419 103857765 106438161 106358274 102608051 102622796 100777075 100791057 100794488 100245723 100247198 100258653 7466072 101252132 101252808 102599744 102603607 107831062 107831645 66051883 5723817
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