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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107952986   E3 ubiquitin-protein ligase UPL1 
 ath-u.5   UPL1   LOW protein: E3 ubiquitin ligase-like protein 
 ath-u.5   UPL2   ubiquitin-protein ligase 2 
 gma-u.5   100819012   E3 ubiquitin-protein ligase UPL1 
 gma-u.5   100801545   E3 ubiquitin-protein ligase UPL1 
 vvi-u.5   100246297   E3 ubiquitin-protein ligase UPL1 
 ppo-u.5   18095379   E3 ubiquitin-protein ligase UPL1 
 ppo-u.5   18103282   E3 ubiquitin-protein ligase UPL1 
 mtr-u.5   25493428   E3 ubiquitin-protein ligase UPL1 
 mtr-u.5   25493427   E3 ubiquitin-protein ligase UPL1 
 sly-u.5   101249744   E3 ubiquitin-protein ligase UPL1 
 osa-u.5   4346522   E3 ubiquitin-protein ligase UPL1 
 zma-u.5   100304346   E3 ubiquitin-protein ligase UPL1 

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Top 50 coexpressed genes to 107952986 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107952986 (ghi-r.1 coexpression data)

CoexMap"107952986"


ghiLOC107952986 | Entrez gene ID : 107952986    
Species ghi ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit bna bdi sbi cre
Paralog 1 2 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
GO BP
GO:0000209 [list] [network] protein polyubiquitination  (192 genes)  IEA  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (871 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016743693.2 [sequence] [blastp]
XP_040932614.1 [sequence] [blastp]
XP_040932616.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  cyto 2,  cyto_nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1,  cyto_E.R. 1  (predict for XP_016743693.2)
chlo 3,  nucl 2,  cyto 2,  cyto_nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1,  cyto_E.R. 1  (predict for XP_040932614.1)
chlo 3,  nucl 2,  cyto 2,  cyto_nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1,  cyto_E.R. 1  (predict for XP_040932616.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for XP_016743693.2)
mito 6,  other 3  (predict for XP_040932614.1)
mito 6,  other 3  (predict for XP_040932616.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107952986

.
ath-u.5
for
UPL1

.
ath-u.5
for
UPL2

.
gma-u.5
for
100819012

.
gma-u.5
for
100801545

.
vvi-u.5
for
100246297

.
ppo-u.5
for
18095379

.
ppo-u.5
for
18103282

.
mtr-u.5
for
25493428

.
mtr-u.5
for
25493427

.
sly-u.5
for
101249744

.
osa-u.5
for
4346522

.
zma-u.5
for
100304346

.


Ortholog ID: 12043
Species ath ath gma gma sly osa zma bra vvi ppo ppo mtr mtr ghi ghi bna sbi sot cit nta nta
Symbol UPL1 UPL2 LOC100801545 LOC100819012 LOC101249744 LOC4346522 LOC100304346 LOC103871016 LOC100246297 LOC18095379 LOC18103282 LOC25493427 LOC25493428 LOC107952986 LOC107921765 LOC125610053 LOC110432934 LOC102593233 LOC102627750 LOC107803669 LOC107791675
Function* LOW protein: E3 ubiquitin ligase-like protein ubiquitin-protein ligase 2 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03082 ATP-dependent chromatin remodeling 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna03082 ATP-dependent chromatin remodeling 3
bna03015 mRNA surveillance pathway 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842036 843368 100801545 100819012 101249744 4346522 100304346 103871016 100246297 18095379 18103282 25493427 25493428 107952986 107921765 125610053 110432934 102593233 102627750 107803669 107791675
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