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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UPL1   LOW protein: E3 ubiquitin ligase-like protein 
 ath-r.7   UPL1   LOW protein: E3 ubiquitin ligase-like protein 
 ath-e.2   UPL1   LOW protein: E3 ubiquitin ligase-like protein 
 ath-u.5   UPL2   ubiquitin-protein ligase 2 
 bra-r.6   103871016   E3 ubiquitin-protein ligase UPL1 
 bna-r.1   125610053   E3 ubiquitin-protein ligase UPL1-like 
 ghi-r.1   107952986   E3 ubiquitin-protein ligase UPL1 
 ghi-r.1   107921765   E3 ubiquitin-protein ligase UPL1 
 cit-r.1   102627750   E3 ubiquitin-protein ligase UPL1 
 gma-u.5   100819012   E3 ubiquitin-protein ligase UPL1 
 gma-u.5   100801545   E3 ubiquitin-protein ligase UPL1 
 vvi-u.5   100246297   E3 ubiquitin-protein ligase UPL1 
 ppo-u.5   18095379   E3 ubiquitin-protein ligase UPL1 
 ppo-u.5   18103282   E3 ubiquitin-protein ligase UPL1 
 mtr-u.5   25493428   E3 ubiquitin-protein ligase UPL1 
 mtr-u.5   25493427   E3 ubiquitin-protein ligase UPL1 
 sly-u.5   101249744   E3 ubiquitin-protein ligase UPL1 
 sot-r.1   102593233   E3 ubiquitin-protein ligase UPL1-like 
 nta-r.1   107791675   E3 ubiquitin-protein ligase UPL1-like 
 nta-r.1   107803669   E3 ubiquitin-protein ligase UPL1 
 osa-u.5   4346522   E3 ubiquitin-protein ligase UPL1 
 zma-u.5   100304346   E3 ubiquitin-protein ligase UPL1 
 sbi-r.1   110432934   E3 ubiquitin-protein ligase UPL1-like 

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Top 50 coexpressed genes to UPL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPL1 (ath-u.5 coexpression data)

CoexMap"842036"


athUPL1 | Entrez gene ID : 842036      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma sbi tae hvu bdi cre
Paralog 4 1 1 2 1 2 1 2 2 1 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  ISS  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (192 genes)  ISS TAS  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA RCA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA IMP ISS  
Protein NP_001185245.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  mito 2,  nucl 1,  pero 1  (predict for NP_001185245.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_001185245.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UPL1
ath-r.7
for
UPL1
ath-e.2
for
UPL1
ath-u.5
for
UPL2
bra-r.6
for
103871016
bna-r.1
for
125610053
ghi-r.1
for
107952986
ghi-r.1
for
107921765
cit-r.1
for
102627750
gma-u.5
for
100819012
gma-u.5
for
100801545
vvi-u.5
for
100246297
ppo-u.5
for
18095379
ppo-u.5
for
18103282
mtr-u.5
for
25493428
mtr-u.5
for
25493427
sly-u.5
for
101249744
sot-r.1
for
102593233
nta-r.1
for
107791675
nta-r.1
for
107803669
osa-u.5
for
4346522
zma-u.5
for
100304346
sbi-r.1
for
110432934


Ortholog ID: 12043
Species ath ath bra bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma sbi
Symbol UPL1 UPL2 LOC103871016 LOC125610053 LOC107952986 LOC107921765 LOC102627750 LOC100819012 LOC100801545 LOC100246297 LOC18095379 LOC18103282 LOC25493428 LOC25493427 LOC101249744 LOC102593233 LOC107791675 LOC107803669 LOC4346522 LOC100304346 LOC110432934
Function* LOW protein: E3 ubiquitin ligase-like protein ubiquitin-protein ligase 2 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1-like E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1 E3 ubiquitin-protein ligase UPL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03082 ATP-dependent chromatin remodeling 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna03082 ATP-dependent chromatin remodeling 3
bna03015 mRNA surveillance pathway 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842036 843368 103871016 125610053 107952986 107921765 102627750 100819012 100801545 100246297 18095379 18103282 25493428 25493427 101249744 102593233 107791675 107803669 4346522 100304346 110432934
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