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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107957709   F-box protein SKP2A 
 ghi-r.1   107951990   F-box protein SKP2B 
 ghi-r.1   107951467   F-box protein SKP2B 
 ghi-r.1   107914131   F-box protein SKP2A 
 ath-u.5   SKP2A   F-box/RNI-like superfamily protein 
 ath-u.5   SKP2B   RNI-like superfamily protein 
 bra-r.6   103835748   F-box protein SKP2A 
 bra-r.6   103832158   F-box protein SKP2B 
 bra-r.6   103830576   F-box protein SKP2B 
 bna-r.1   106440720   F-box protein SKP2B-like 
 bna-r.1   125574872   F-box protein SKP2B-like 
 bna-r.1   106354633   F-box protein SKP2B 
 cit-r.1   102610462   F-box protein SKP2A-like 
 gma-u.5   121173056   F-box protein SKP2B 
 gma-u.5   100818928   F-box protein SKP2B 
 gma-u.5   100797840   F-box protein SKP2A 
 vvi-u.5   100255759   F-box protein SKP2B 
 ppo-u.5   7466433   F-box protein SKP2A 
 ppo-u.5   7469194   F-box protein SKP2B 
 mtr-u.5   25489745   F-box protein SKP2A 
 mtr-u.5   25482432   F-box protein SKP2A 
 sly-u.5   101254991   F-box protein SKP2B 
 sot-r.1   102579014   F-box protein SKP2A 
 nta-r.1   107775581   F-box protein SKP2A 
 nta-r.1   107783609   F-box protein SKP2A 
 osa-u.5   4324993   F-box protein SKP2A 
 osa-u.5   4338850   F-box protein SKP2A 
 zma-u.5   100274332   uncharacterized LOC100274332 
 zma-u.5   100274363   uncharacterized LOC100274363 
 tae-r.2   123062952   F-box protein SKP2A 
 tae-r.2   123071814   F-box protein SKP2A 
 tae-r.2   123080143   F-box protein SKP2A 
 hvu-r.1   123445130   F-box protein SKP2A-like 
 hvu-r.1   123443034   F-box protein SKP2A-like 
 sbi-r.1   8063136   F-box protein SKP2A 
 sbi-r.1   8058475   F-box protein SKP2A 
 bdi-r.1   100821602   F-box protein SKP2A 
 bdi-r.1   100822312   F-box protein SKP2A 

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Top 50 coexpressed genes to 107957709 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107957709 (ghi-r.1 coexpression data)

CoexMap"107957709"


ghiLOC107957709 | Entrez gene ID : 107957709    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 1 3 1 2 2 1 1 2 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (153 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (155 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016748757.1 [sequence] [blastp]
XP_040970034.1 [sequence] [blastp]
XP_040970035.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_E.R. 4,  nucl 1,  chlo 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016748757.1)
cyto 6,  cyto_E.R. 4,  nucl 1,  chlo 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040970034.1)
cyto 4,  chlo 3,  nucl 3  (predict for XP_040970035.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016748757.1)
other 8  (predict for XP_040970034.1)
other 8  (predict for XP_040970035.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107957709
ghi-r.1
for
107951990
ghi-r.1
for
107951467
ghi-r.1
for
107914131
ath-u.5
for
SKP2A
ath-u.5
for
SKP2B
bra-r.6
for
103835748
bra-r.6
for
103832158
bra-r.6
for
103830576
bna-r.1
for
106440720
bna-r.1
for
125574872
bna-r.1
for
106354633
cit-r.1
for
102610462
gma-u.5
for
121173056
gma-u.5
for
100818928
gma-u.5
for
100797840
vvi-u.5
for
100255759
ppo-u.5
for
7466433
ppo-u.5
for
7469194
mtr-u.5
for
25489745
mtr-u.5
for
25482432
sly-u.5
for
101254991
sot-r.1
for
102579014
nta-r.1
for
107775581
nta-r.1
for
107783609
osa-u.5
for
4324993
osa-u.5
for
4338850
zma-u.5
for
100274332
zma-u.5
for
100274363
tae-r.2
for
123062952
tae-r.2
for
123071814
tae-r.2
for
123080143
hvu-r.1
for
123445130
hvu-r.1
for
123443034
sbi-r.1
for
8063136
sbi-r.1
for
8058475
bdi-r.1
for
100821602
bdi-r.1
for
100822312


Ortholog ID: 3638
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107951990 LOC107951467 LOC107910407 SKP2A SKP2B LOC103835748 LOC103832158 LOC103830576 LOC106440720 LOC106377228 LOC106425880 LOC102610462 LOC121173056 LOC100797840 LOC100788845 LOC100255759 LOC7466433 LOC7469194 LOC25489745 LOC25482432 LOC101254991 LOC102579014 LOC107775581 LOC107783609 LOC4324993 LOC4338850 LOC100274332 LOC100274363 LOC123133972 LOC123182089 LOC123056689 LOC123445130 LOC123443034 LOC8063136 LOC8058475 LOC100821602 LOC100822312
Function* F-box protein SKP2B F-box protein SKP2B F-box protein SKP2A F-box/RNI-like superfamily protein RNI-like superfamily protein F-box protein SKP2A F-box protein SKP2B F-box protein SKP2B F-box protein SKP2B-like F-box protein SKP2B-like F-box protein SKP2A F-box protein SKP2A-like F-box protein SKP2B F-box protein SKP2A F-box protein SKP2B F-box protein SKP2B F-box protein SKP2A F-box protein SKP2B F-box protein SKP2A F-box protein SKP2A F-box protein SKP2B F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A uncharacterized LOC100274332 uncharacterized LOC100274363 F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A-like F-box protein SKP2A-like F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00270 Cysteine and methionine metabolism 2
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra00740 Riboflavin metabolism 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00730 Thiamine metabolism 2
cit04146 Peroxisome 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00500 Starch and sucrose metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
vvi00360 Phenylalanine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo01200 Carbon metabolism 3
ppo04146 Peroxisome 3
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00920 Sulfur metabolism 4
ppo00270 Cysteine and methionine metabolism 3
ppo00670 One carbon pool by folate 3
ppo01320 Sulfur cycle 3
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
mtr00350 Tyrosine metabolism 4
mtr00360 Phenylalanine metabolism 4
mtr01240 Biosynthesis of cofactors 3
mtr01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00500 Starch and sucrose metabolism 3
mtr00071 Fatty acid degradation 2
mtr00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma01210 2-Oxocarboxylic acid metabolism 4
zma00220 Arginine biosynthesis 3
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi00010 Glycolysis / Gluconeogenesis 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107951990 107951467 107910407 838740 844036 103835748 103832158 103830576 106440720 106377228 106425880 102610462 121173056 100797840 100788845 100255759 7466433 7469194 25489745 25482432 101254991 102579014 107775581 107783609 4324993 4338850 100274332 100274363 123133972 123182089 123056689 123445130 123443034 8063136 8058475 100821602 100822312
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