ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	SKP2B	RNI-like superfamily protein
ath-r.7	SKP2B	RNI-like superfamily protein
ath-m.9	SKP2B	RNI-like superfamily protein
ath-e.2	SKP2B	RNI-like superfamily protein
ath-m.4.bio	SKP2B	RNI-like superfamily protein
ath-m.4.hor	SKP2B	RNI-like superfamily protein
ath-m.4.lig	SKP2B	RNI-like superfamily protein
ath-m.4.str	SKP2B	RNI-like superfamily protein
ath-m.4.tis	SKP2B	RNI-like superfamily protein
ath-u.5	SKP2A	F-box/RNI-like superfamily protein
gma-u.5	121173056	F-box protein SKP2B
gma-u.5	100793275	F-box protein SKP2B-like
gma-u.5	100788845	F-box protein SKP2B
vvi-u.5	100255759	F-box protein SKP2B
ppo-u.5	7469194	F-box protein SKP2B
ppo-u.5	7466433	F-box protein SKP2A
mtr-u.5	25482432	F-box protein SKP2A
mtr-u.5	25489745	F-box protein SKP2A
sly-u.5	101254991	F-box protein SKP2B
osa-u.5	4338850	F-box protein SKP2A
osa-u.5	4324993	F-box protein SKP2A
zma-u.5	100274363	uncharacterized LOC100274363
zma-u.5	100274332	uncharacterized LOC100274332

Top 50 coexpressed genes to SKP2B (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SKP2B (ath-u.5 coexpression data)

CoexMap"844036"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)

GO BP

GO:1901332 [list] [network] negative regulation of lateral root development	(9 genes)	IMP
GO:0010286 [list] [network] heat acclimation	(64 genes)	IEP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(219 genes)	TAS
GO:0051603 [list] [network] proteolysis involved in protein catabolic process	(242 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001185415.1 [sequence] [blastp]
NP_001322101.1 [sequence] [blastp]
NP_001322102.1 [sequence] [blastp]
NP_565147.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, chlo 1, pero 1	(predict for NP_001185415.1)
cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2	(predict for NP_001322101.1)
cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2	(predict for NP_001322102.1)
nucl 5, cyto 2, chlo 1, pero 1	(predict for NP_565147.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001185415.1)
other 9	(predict for NP_001322101.1)
other 9	(predict for NP_001322102.1)
other 9	(predict for NP_565147.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SKP2B	ath-r.7 for SKP2B	ath-m.9 for SKP2B	ath-e.2 for SKP2B	ath-m.4.bio for SKP2B	ath-m.4.hor for SKP2B	ath-m.4.lig for SKP2B	ath-m.4.str for SKP2B	ath-m.4.tis for SKP2B	ath-u.5 for SKP2A	gma-u.5 for 121173056	gma-u.5 for 100793275	gma-u.5 for 100788845	vvi-u.5 for 100255759	ppo-u.5 for 7469194	ppo-u.5 for 7466433	mtr-u.5 for 25482432	mtr-u.5 for 25489745	sly-u.5 for 101254991	osa-u.5 for 4338850	osa-u.5 for 4324993	zma-u.5 for 100274363	zma-u.5 for 100274332

Ortholog

Ortholog ID: 3638

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SKP2B

SKP2A

Function^*

RNI-like superfamily protein

F-box/RNI-like superfamily protein

F-box protein SKP2B

F-box protein SKP2B-like

F-box protein SKP2A

F-box protein SKP2B

F-box protein SKP2A-like

F-box protein SKP2B

F-box protein SKP2A

F-box protein SKP2B

F-box protein SKP2A

uncharacterized LOC100274332

uncharacterized LOC100274363

F-box protein SKP2A

F-box protein SKP2A-like

F-box protein SKP2A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ath00270	Cysteine and methionine metabolism	2
ath00350	Tyrosine metabolism	2
ath00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04146	Peroxisome	2
bra00740	Riboflavin metabolism	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00730	Thiamine metabolism	2
cit04146	Peroxisome	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma00500	Starch and sucrose metabolism	2
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	2
vvi00330	Arginine and proline metabolism	2
vvi00360	Phenylalanine metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00920	Sulfur metabolism	4
ppo00270	Cysteine and methionine metabolism	3
ppo00670	One carbon pool by folate	3
ppo01320	Sulfur cycle	3
ppo04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo01200	Carbon metabolism	3
ppo04146	Peroxisome	3
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
mtr00350	Tyrosine metabolism	4
mtr00360	Phenylalanine metabolism	4
mtr01240	Biosynthesis of cofactors	3
mtr01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	3
mtr00500	Starch and sucrose metabolism	3
mtr00071	Fatty acid degradation	2
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	6
sly04016	MAPK signaling pathway - plant	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	7
nta04016	MAPK signaling pathway - plant	5
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta04016	MAPK signaling pathway - plant	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma01210	2-Oxocarboxylic acid metabolism	4
zma00220	Arginine biosynthesis	3
zma00250	Alanine, aspartate and glutamate metabolism	3
zma00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi00010	Glycolysis / Gluconeogenesis	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	3
bdi01200	Carbon metabolism	3
bdi00010	Glycolysis / Gluconeogenesis	2

Expression

Expression pattern

Entrez Gene ID^*

844036

838740

103830576

103832158

106377228

106440720

107910407

107951467

102610462

121173056

100788845

100255759

7469194

7466433

25489745

25482432

101254991

102579014

107775581

107783609

4324993

4338850

100274332

100274363

123182089

123133972

123443034

123445130

8058475

8063136

100822312

100821602

The preparation time of this page was 0.1 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	10	3	1	2	2	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SKP2B (ath-u.5 coexpression data)

Top 50 enrichment test to SKP2B (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**