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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8063136   F-box protein SKP2A 
 zma-u.5   100274332   uncharacterized LOC100274332 
 zma-u.5   100274363   uncharacterized LOC100274363 
 osa-u.5   4338850   F-box protein SKP2A 
 osa-u.5   4324993   F-box protein SKP2A 
 ath-u.5   SKP2A   F-box/RNI-like superfamily protein 
 ath-u.5   SKP2B   RNI-like superfamily protein 
 gma-u.5   121173056   F-box protein SKP2B 
 gma-u.5   100818928   F-box protein SKP2B 
 gma-u.5   100797840   F-box protein SKP2A 
 sly-u.5   101254991   F-box protein SKP2B 
 vvi-u.5   100255759   F-box protein SKP2B 
 ppo-u.5   7469194   F-box protein SKP2B 
 ppo-u.5   7466433   F-box protein SKP2A 
 mtr-u.5   25482432   F-box protein SKP2A 
 mtr-u.5   25489745   F-box protein SKP2A 

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Top 50 coexpressed genes to 8063136 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063136 (sbi-r.1 coexpression data)

CoexMap"8063136"


sbiLOC8063136 | Entrez gene ID : 8063136      
Species sbi zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi cre
Paralog 1 2 2 2 3 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi04120 [list] [network] Ubiquitin mediated proteolysis (153 genes)
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (59 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (52 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002458866.1 [sequence] [blastp]
XP_021313036.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4  (predict for XP_002458866.1)
nucl 3,  cyto 2,  E.R. 1,  E.R._plas 1,  golg 1,  cysk_nucl 1  (predict for XP_021313036.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002458866.1)
other 8  (predict for XP_021313036.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8063136

.
zma-u.5
for
100274332

.
zma-u.5
for
100274363

.
osa-u.5
for
4338850

.
osa-u.5
for
4324993

.
ath-u.5
for
SKP2A

.
ath-u.5
for
SKP2B

.
gma-u.5
for
121173056

.
gma-u.5
for
100818928

.
gma-u.5
for
100797840

.
sly-u.5
for
101254991

.
vvi-u.5
for
100255759

.
ppo-u.5
for
7469194

.
ppo-u.5
for
7466433

.
mtr-u.5
for
25482432

.
mtr-u.5
for
25489745

.


Ortholog ID: 3638
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol SKP2B SKP2A LOC121173056 LOC100788845 LOC101254991 LOC4324993 LOC4338850 LOC100274332 LOC100274363 LOC103830576 LOC103832158 LOC100255759 LOC7469194 LOC7466433 LOC25489745 LOC25482432 LOC123182089 LOC123133972 LOC123443034 LOC123445130 LOC107910407 LOC107951467 LOC106377228 LOC106440720 LOC8058475 LOC8063136 LOC102579014 LOC102610462 LOC100822312 LOC100821602 LOC107775581 LOC107783609
Function* RNI-like superfamily protein F-box/RNI-like superfamily protein F-box protein SKP2B F-box protein SKP2B F-box protein SKP2B F-box protein SKP2A F-box protein SKP2A uncharacterized LOC100274332 uncharacterized LOC100274363 F-box protein SKP2B F-box protein SKP2B F-box protein SKP2B F-box protein SKP2B F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A-like F-box protein SKP2A-like F-box protein SKP2A F-box protein SKP2B F-box protein SKP2B-like F-box protein SKP2B-like F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A-like F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A F-box protein SKP2A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00270 Cysteine and methionine metabolism 2
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00500 Starch and sucrose metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma01210 2-Oxocarboxylic acid metabolism 4
zma00220 Arginine biosynthesis 3
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra00740 Riboflavin metabolism 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
vvi00360 Phenylalanine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00920 Sulfur metabolism 4
ppo00270 Cysteine and methionine metabolism 3
ppo00670 One carbon pool by folate 3
ppo01320 Sulfur cycle 3
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo01200 Carbon metabolism 3
ppo04146 Peroxisome 3
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
mtr00350 Tyrosine metabolism 4
mtr00360 Phenylalanine metabolism 4
mtr01240 Biosynthesis of cofactors 3
mtr01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00500 Starch and sucrose metabolism 3
mtr00071 Fatty acid degradation 2
mtr00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00730 Thiamine metabolism 2
cit04146 Peroxisome 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi00010 Glycolysis / Gluconeogenesis 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844036 838740 121173056 100788845 101254991 4324993 4338850 100274332 100274363 103830576 103832158 100255759 7469194 7466433 25489745 25482432 123182089 123133972 123443034 123445130 107910407 107951467 106377228 106440720 8058475 8063136 102579014 102610462 100822312 100821602 107775581 107783609
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