ATTED-II : GeneCoexpression result

Species	Gene	Description
hvu-r.1	123445130	F-box protein SKP2A-like
osa-u.5	4338850	F-box protein SKP2A
osa-u.5	4324993	F-box protein SKP2A
zma-u.5	100274332	uncharacterized LOC100274332
zma-u.5	100274363	uncharacterized LOC100274363
ath-u.5	SKP2A	F-box/RNI-like superfamily protein
ath-u.5	SKP2B	RNI-like superfamily protein
gma-u.5	121173056	F-box protein SKP2B
gma-u.5	100818928	F-box protein SKP2B
gma-u.5	100797840	F-box protein SKP2A
sly-u.5	101254991	F-box protein SKP2B
vvi-u.5	100255759	F-box protein SKP2B
ppo-u.5	7469194	F-box protein SKP2B
ppo-u.5	7466433	F-box protein SKP2A
mtr-u.5	25489745	F-box protein SKP2A
mtr-u.5	25482432	F-box protein SKP2A

Annotation

functional annotation

KEGG

hvg04120 [list] [network] Ubiquitin mediated proteolysis (227 genes)

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(90 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(48 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(4692 genes)

IEA

Protein

XP_044978005.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, chlo 1, plas 1, E.R. 1, golg 1, cyto_nucl 1, golg_plas 1, E.R._plas 1

(predict for XP_044978005.1)

Subcellular
localization
TargetP

other 5

(predict for XP_044978005.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123445130	osa-u.5 for 4338850	osa-u.5 for 4324993	zma-u.5 for 100274332	zma-u.5 for 100274363	ath-u.5 for SKP2A	ath-u.5 for SKP2B	gma-u.5 for 121173056	gma-u.5 for 100818928	gma-u.5 for 100797840	sly-u.5 for 101254991	vvi-u.5 for 100255759	ppo-u.5 for 7469194	ppo-u.5 for 7466433	mtr-u.5 for 25489745	mtr-u.5 for 25482432

Ortholog

Ortholog ID: 3638

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

SKP2B

SKP2A

Function^*

F-box protein SKP2A-like

F-box protein SKP2A

uncharacterized LOC100274332

uncharacterized LOC100274363

F-box protein SKP2A

RNI-like superfamily protein

F-box/RNI-like superfamily protein

F-box protein SKP2B

F-box protein SKP2A

F-box protein SKP2B

F-box protein SKP2B-like

F-box protein SKP2A

F-box protein SKP2A-like

F-box protein SKP2A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi00010	Glycolysis / Gluconeogenesis	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	3
bdi01200	Carbon metabolism	3
bdi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma01210	2-Oxocarboxylic acid metabolism	4
zma00220	Arginine biosynthesis	3
zma00250	Alanine, aspartate and glutamate metabolism	3
zma00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ath00270	Cysteine and methionine metabolism	2
ath00350	Tyrosine metabolism	2
ath00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma00500	Starch and sucrose metabolism	2
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	6
sly04016	MAPK signaling pathway - plant	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04146	Peroxisome	2
bra00740	Riboflavin metabolism	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	2
vvi00330	Arginine and proline metabolism	2
vvi00360	Phenylalanine metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00920	Sulfur metabolism	4
ppo00270	Cysteine and methionine metabolism	3
ppo00670	One carbon pool by folate	3
ppo01320	Sulfur cycle	3
ppo04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo01200	Carbon metabolism	3
ppo04146	Peroxisome	3
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
mtr00350	Tyrosine metabolism	4
mtr00360	Phenylalanine metabolism	4
mtr01240	Biosynthesis of cofactors	3
mtr01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	3
mtr00500	Starch and sucrose metabolism	3
mtr00071	Fatty acid degradation	2
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00730	Thiamine metabolism	2
cit04146	Peroxisome	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	7
nta04016	MAPK signaling pathway - plant	5
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta04016	MAPK signaling pathway - plant	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

123443034

123445130

123182089

123133972

100822312

100821602

4324993

4338850

100274332

100274363

8058475

8063136

844036

838740

121173056

100788845

101254991

103830576

103832158

100255759

7469194

7466433

25489745

25482432

107910407

107951467

106377228

106440720

102579014

102610462

107775581

107783609

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123445130 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123445130 (hvu-r.1 coexpression data)


Species	hvu	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	2	2	3	1	1	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123445130 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123445130 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**