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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107961695   lys-63-specific deubiquitinase BRCC36 
 ath-u.5   BRCC36B   Mov34/MPN/PAD-1 family protein 
 ath-u.5   BRCC36A   Mov34/MPN/PAD-1 family protein 
 gma-u.5   100784991   uncharacterized LOC100784991 
 gma-u.5   100781761   lys-63-specific deubiquitinase BRCC36 
 vvi-u.5   100253140   uncharacterized LOC100253140 
 ppo-u.5   7490962   uncharacterized LOC7490962 
 mtr-u.5   11434784   lys-63-specific deubiquitinase BRCC36 
 sly-u.5   101265551   uncharacterized LOC101265551 
 osa-u.5   4339481   uncharacterized LOC4339481 
 zma-u.5   100283593   mov34/MPN/PAD-1 family protein 

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Top 50 coexpressed genes to 107961695 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107961695 (ghi-r.1 coexpression data)

CoexMap"107961695"


ghiLOC107961695 | Entrez gene ID : 107961695    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03440 [list] [network] Homologous recombination (106 genes)
GO BP
GO:0070536 [list] [network] protein K63-linked deubiquitination  (12 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (207 genes)  IEA  
GO CC
GO:0070552 [list] [network] BRISC complex  (6 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (13 genes)  IEA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (65 genes)  IEA  
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (141 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (232 genes)  IEA  
Protein XP_040971765.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  mito 1,  cysk 1  (predict for XP_040971765.1)
Subcellular
localization
TargetP
scret 7,  other 5  (predict for XP_040971765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107961695
ath-u.5
for
BRCC36B
ath-u.5
for
BRCC36A
gma-u.5
for
100784991
gma-u.5
for
100781761
vvi-u.5
for
100253140
ppo-u.5
for
7490962
mtr-u.5
for
11434784
sly-u.5
for
101265551
osa-u.5
for
4339481
zma-u.5
for
100283593


Ortholog ID: 9452
Species ghi ghi ath ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC107901767 LOC107961695 BRCC36A BRCC36B LOC103830424 LOC106347023 LOC106353359 LOC102613692 LOC100784991 LOC100781761 LOC100253140 LOC7490962 LOC11434784 LOC101265551 LOC102592487 LOC107831121 LOC107826806 LOC4339481 LOC100283593 LOC123143018 LOC123065475 LOC123448052 LOC8068998 LOC100822119 CHLRE_11g475400v5
Function* lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 Mov34/MPN/PAD-1 family protein Mov34/MPN/PAD-1 family protein uncharacterized LOC103830424 26S proteasome non-ATPase regulatory subunit 14 lys-63-specific deubiquitinase BRCC36 uncharacterized LOC102613692 uncharacterized LOC100784991 lys-63-specific deubiquitinase BRCC36 uncharacterized LOC100253140 uncharacterized LOC7490962 lys-63-specific deubiquitinase BRCC36 uncharacterized LOC101265551 lys-63-specific deubiquitinase BRCC36-like uncharacterized LOC107831121 uncharacterized LOC107826806 uncharacterized LOC4339481 mov34/MPN/PAD-1 family protein lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36-like lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 2
ath01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03040 Spliceosome 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04136 Autophagy - other 6
bna04382 Cornified envelope formation 6
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04136 Autophagy - other 6
bna04382 Cornified envelope formation 6
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00541 Biosynthesis of various nucleotide sugars 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 4
nta03440 Homologous recombination 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00760 Nicotinate and nicotinamide metabolism 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 4
zma00500 Starch and sucrose metabolism 4
zma00520 Amino sugar and nucleotide sugar metabolism 4
zma01250 Biosynthesis of nucleotide sugars 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107901767 107961695 844361 819866 103830424 106347023 106353359 102613692 100784991 100781761 100253140 7490962 11434784 101265551 102592487 107831121 107826806 4339481 100283593 123143018 123065475 123448052 8068998 100822119 5727547
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