ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11427408	RNA pseudouridine synthase 2, chloroplastic
mtr-r.5	11427408	RNA pseudouridine synthase 2, chloroplastic
mtr-m.5	11427408	RNA pseudouridine synthase 2, chloroplastic
gma-u.5	100810383	RNA pseudouridine synthase 2, chloroplastic
ppo-u.5	7496900	RNA pseudouridine synthase 2, chloroplastic
ath-u.5	AT1G76050	Pseudouridine synthase family protein
vvi-u.5	100852977	RNA pseudouridine synthase 2, chloroplastic
sly-u.5	101246422	RNA pseudouridine synthase 2, chloroplastic
osa-u.5	4342081	RNA pseudouridine synthase 2, chloroplastic-like
zma-u.5	100272459	RNA binding protein

functional annotation

KEGG

GO BP

GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis

(8 genes)

IEA

GO CC

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(21 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1400 genes)	IEA

Protein

XP_003603819.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_003603819.2)

Subcellular
localization
TargetP

chlo 8

(predict for XP_003603819.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11427408	mtr-r.5 for 11427408	mtr-m.5 for 11427408	gma-u.5 for 100810383	ppo-u.5 for 7496900	ath-u.5 for AT1G76050	vvi-u.5 for 100852977	sly-u.5 for 101246422	osa-u.5 for 4342081	zma-u.5 for 100272459

Ortholog ID: 11134

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA pseudouridine synthase 2, chloroplastic

Pseudouridine synthase family protein

RNA pseudouridine synthase 2, chloroplastic

RNA pseudouridine synthase 2, chloroplastic-like

RNA pseudouridine synthase 2, chloroplastic

RNA pseudouridine synthase 2, chloroplastic-like

RNA binding protein

RNA pseudouridine synthase 2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00061	Fatty acid biosynthesis	2
mtr01212	Fatty acid metabolism	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00860	Porphyrin metabolism	3
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
cre01230	Biosynthesis of amino acids	3

Expression

Expression pattern

Entrez Gene ID^*

11427408

100810383

7496900

843937

103832049

100852977

107905545

107937570

106421521

106406421

102619972

101246422

102581156

107811616

4342081

100272459

123160360

123149656

123409561

8065000

100824777

5727258

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11427408 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11427408 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11427408 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11427408 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**