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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123149656   RNA pseudouridine synthase 2, chloroplastic 
 tae-r.2   123160360   RNA pseudouridine synthase 2, chloroplastic 
 tae-r.2   123170431   RNA pseudouridine synthase 2, chloroplastic 
 hvu-r.1   123409561   RNA pseudouridine synthase 2, chloroplastic 
 bdi-r.1   100824777   RNA pseudouridine synthase 2, chloroplastic 
 osa-u.5   4342081   RNA pseudouridine synthase 2, chloroplastic-like 
 zma-u.5   100272459   RNA binding protein 
 sbi-r.1   8065000   RNA pseudouridine synthase 2, chloroplastic 
 ath-u.5   AT1G76050   Pseudouridine synthase family protein 
 gma-u.5   100810383   RNA pseudouridine synthase 2, chloroplastic 
 sly-u.5   101246422   RNA pseudouridine synthase 2, chloroplastic 
 bra-r.6   103832049   RNA pseudouridine synthase 2, chloroplastic 
 vvi-u.5   100852977   RNA pseudouridine synthase 2, chloroplastic 
 ppo-u.5   7496900   RNA pseudouridine synthase 2, chloroplastic 
 mtr-u.5   11427408   RNA pseudouridine synthase 2, chloroplastic 
 ghi-r.1   107937570   RNA pseudouridine synthase 2, chloroplastic-like 
 ghi-r.1   107905545   RNA pseudouridine synthase 2, chloroplastic 
 bna-r.1   106421521   RNA pseudouridine synthase 2, chloroplastic 
 bna-r.1   106406421   RNA pseudouridine synthase 2, chloroplastic 
 bna-r.1   125576373   RNA pseudouridine synthase 2, chloroplastic-like 
 sot-r.1   102581156   RNA pseudouridine synthase 2, chloroplastic 
 cit-r.1   102619972   RNA pseudouridine synthase 2, chloroplastic 
 nta-r.1   107811616   RNA pseudouridine synthase 2, chloroplastic 
 cre-r.1   CHLRE_02g078750v5   uncharacterized protein 

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Top 50 coexpressed genes to 123149656 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123149656 (tae-r.2 coexpression data)

CoexMap"123149656"


taeLOC123149656 | Entrez gene ID : 123149656    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (22 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (60 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044425293.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_044425293.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_044425293.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123149656
tae-r.2
for
123160360
tae-r.2
for
123170431
hvu-r.1
for
123409561
bdi-r.1
for
100824777
osa-u.5
for
4342081
zma-u.5
for
100272459
sbi-r.1
for
8065000
ath-u.5
for
AT1G76050
gma-u.5
for
100810383
sly-u.5
for
101246422
bra-r.6
for
103832049
vvi-u.5
for
100852977
ppo-u.5
for
7496900
mtr-u.5
for
11427408
ghi-r.1
for
107937570
ghi-r.1
for
107905545
bna-r.1
for
106421521
bna-r.1
for
106406421
bna-r.1
for
125576373
sot-r.1
for
102581156
cit-r.1
for
102619972
nta-r.1
for
107811616
cre-r.1
for
CHLRE_02g078750v5


Ortholog ID: 11134
Species tae tae tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi ghi bna bna bna sot cit nta cre
Symbol LOC123149656 LOC123160360 LOC123170431 LOC123409561 LOC100824777 LOC4342081 LOC100272459 LOC8065000 AT1G76050 LOC100810383 LOC101246422 LOC103832049 LOC100852977 LOC7496900 LOC11427408 LOC107937570 LOC107905545 LOC106421521 LOC106406421 LOC125576373 LOC102581156 LOC102619972 LOC107811616 CHLRE_02g078750v5
Function* RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA binding protein RNA pseudouridine synthase 2, chloroplastic Pseudouridine synthase family protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 2
mtr01212 Fatty acid metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123149656 123160360 123170431 123409561 100824777 4342081 100272459 8065000 843937 100810383 101246422 103832049 100852977 7496900 11427408 107937570 107905545 106421521 106406421 125576373 102581156 102619972 107811616 5727258
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