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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121210912   protein LATE ELONGATED HYPOCOTYL 
 ath-u.5   LHY   Homeodomain-like superfamily protein 
 gma-u.5   MYB114   MYB transcription factor MYB114 
 gma-u.5   LCL4   LHY1/CCA1-like protein 
 gma-u.5   LCL1   late elongated hypocotyl and circadian clock associated-1-like protein 1 
 vvi-u.5   100250535   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7478808   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7486811   protein LATE ELONGATED HYPOCOTYL 
 mtr-u.5   11432385   protein LATE ELONGATED HYPOCOTYL 
 sly-u.5   101261662   protein LATE ELONGATED HYPOCOTYL 
 osa-u.5   4344703   protein LHY 
 zma-u.5   100281091   LHY protein 
 zma-u.5   100192868   uncharacterized LOC100192868 

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Top 50 coexpressed genes to 121210912 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121210912 (ghi-r.1 coexpression data)

CoexMap"121210912"


ghiLOC121210912 | Entrez gene ID : 121210912    
Species ghi ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi cre bna nta bdi bra
Paralog 1 1 3 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04712 [list] [network] Circadian rhythm - plant (130 genes)
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_040938789.1 [sequence] [blastp]
XP_040938790.1 [sequence] [blastp]
XP_040938791.1 [sequence] [blastp]
XP_040938792.1 [sequence] [blastp]
XP_040938793.1 [sequence] [blastp]
XP_040938794.1 [sequence] [blastp]
XP_040938795.1 [sequence] [blastp]
XP_040938796.1 [sequence] [blastp]
XP_040938797.1 [sequence] [blastp]
XP_040938798.1 [sequence] [blastp]
XP_040938799.1 [sequence] [blastp]
XP_040938800.1 [sequence] [blastp]
XP_040938801.1 [sequence] [blastp]
XP_040938802.1 [sequence] [blastp]
XP_040938803.1 [sequence] [blastp]
XP_040938804.1 [sequence] [blastp]
XP_040938805.1 [sequence] [blastp]
XP_040938806.1 [sequence] [blastp]
XP_040938807.1 [sequence] [blastp]
XP_040938808.1 [sequence] [blastp]
XP_040938809.1 [sequence] [blastp]
XP_040938810.1 [sequence] [blastp]
XP_040938811.1 [sequence] [blastp]
XP_040938812.1 [sequence] [blastp]
XP_040938813.1 [sequence] [blastp]
XP_040938814.1 [sequence] [blastp]
XP_040938815.1 [sequence] [blastp]
XP_040938816.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_040938789.1)
nucl 10  (predict for XP_040938790.1)
nucl 10  (predict for XP_040938791.1)
nucl 10  (predict for XP_040938792.1)
nucl 10  (predict for XP_040938793.1)
nucl 10  (predict for XP_040938794.1)
nucl 10  (predict for XP_040938795.1)
nucl 10  (predict for XP_040938796.1)
nucl 10  (predict for XP_040938797.1)
nucl 10  (predict for XP_040938798.1)
nucl 10  (predict for XP_040938799.1)
nucl 10  (predict for XP_040938800.1)
nucl 10  (predict for XP_040938801.1)
nucl 10  (predict for XP_040938802.1)
nucl 10  (predict for XP_040938803.1)
nucl 10  (predict for XP_040938804.1)
nucl 10  (predict for XP_040938805.1)
nucl 10  (predict for XP_040938806.1)
nucl 10  (predict for XP_040938807.1)
nucl 10  (predict for XP_040938808.1)
nucl 10  (predict for XP_040938809.1)
nucl 10  (predict for XP_040938810.1)
nucl 10  (predict for XP_040938811.1)
nucl 10  (predict for XP_040938812.1)
nucl 10  (predict for XP_040938813.1)
nucl 10  (predict for XP_040938814.1)
nucl 7,  chlo 2  (predict for XP_040938815.1)
nucl 10  (predict for XP_040938816.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040938789.1)
other 9  (predict for XP_040938790.1)
other 9  (predict for XP_040938791.1)
other 9  (predict for XP_040938792.1)
other 9  (predict for XP_040938793.1)
other 9  (predict for XP_040938794.1)
other 9  (predict for XP_040938795.1)
other 9  (predict for XP_040938796.1)
other 9  (predict for XP_040938797.1)
other 9  (predict for XP_040938798.1)
other 9  (predict for XP_040938799.1)
other 9  (predict for XP_040938800.1)
other 9  (predict for XP_040938801.1)
other 9  (predict for XP_040938802.1)
other 9  (predict for XP_040938803.1)
other 9  (predict for XP_040938804.1)
other 9  (predict for XP_040938805.1)
other 9  (predict for XP_040938806.1)
other 9  (predict for XP_040938807.1)
other 9  (predict for XP_040938808.1)
other 9  (predict for XP_040938809.1)
other 9  (predict for XP_040938810.1)
other 9  (predict for XP_040938811.1)
other 9  (predict for XP_040938812.1)
other 9  (predict for XP_040938813.1)
other 9  (predict for XP_040938814.1)
scret 9  (predict for XP_040938815.1)
other 6  (predict for XP_040938816.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121210912

.
ath-u.5
for
LHY

.
gma-u.5
for
MYB114

.
gma-u.5
for
LCL4

.
gma-u.5
for
LCL1

.
vvi-u.5
for
100250535

.
ppo-u.5
for
7478808

.
ppo-u.5
for
7486811

.
mtr-u.5
for
11432385

.
sly-u.5
for
101261662

.
osa-u.5
for
4344703

.
zma-u.5
for
100281091

.
zma-u.5
for
100192868

.


Ortholog ID: 5626
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol LHY LCL1 MYB114 LOC101261662 LOC4344703 LOC100281091 LOC100192868 LOC103844616 LOC103836661 LOC100250535 LOC7478808 LOC7486811 LOC11432385 LOC123147271 LOC123167076 LOC123407924 LOC121210912 LOC107912274 LOC106370900 LOC125595220 LOC8080836 LOC102601616 LOC102627326 LOC100838310 LOC107786145 LOC107775222
Function* Homeodomain-like superfamily protein late elongated hypocotyl and circadian clock associated-1-like protein 1 MYB transcription factor MYB114 protein LATE ELONGATED HYPOCOTYL protein LHY LHY protein uncharacterized LOC100192868 protein LHY protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY protein LHY protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY protein LHY-like protein CCA1 protein LHY protein LATE ELONGATED HYPOCOTYL protein CCA1 protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00270 Cysteine and methionine metabolism 2
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839341 100271888 778086 101261662 4344703 100281091 100192868 103844616 103836661 100250535 7478808 7486811 11432385 123147271 123167076 123407924 121210912 107912274 106370900 125595220 8080836 102601616 102627326 100838310 107786145 107775222
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