ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123413266	probable E3 ubiquitin-protein ligase ATL44
hvu-r.1	123413267	probable E3 ubiquitin-protein ligase ATL44
tae-r.2	123130802	RING-H2 finger protein ATL8
bdi-r.1	100822098	probable E3 ubiquitin-protein ligase ATL44
bdi-r.1	100845743	probable E3 ubiquitin-protein ligase ATL44
osa-u.5	9266473	RING-H2 finger protein ATL80
osa-u.5	4330352	RING-H2 finger protein ATL80
osa-u.5	4336787	probable E3 ubiquitin-protein ligase ATL44
zma-u.5	100192077	putative RING zinc finger domain superfamily protein
zma-u.5	100284205	uncharacterized LOC100284205
zma-u.5	100283712	RING-H2 finger protein ATL1R
sbi-r.1	8066387	probable E3 ubiquitin-protein ligase ATL45
sbi-r.1	8066454	probable E3 ubiquitin-protein ligase ATL44
sbi-r.1	8076019	RING-H2 finger protein ATL8
ath-u.5	RHA3A	RING-H2 finger A3A
ath-u.5	RHA3B	RING-H2 finger A3B
ath-u.5	AT1G20823	RING/U-box superfamily protein
gma-u.5	100786769	RING-H2 finger protein ATL8
gma-u.5	100787383	RING-H2 finger protein ATL8
gma-u.5	100789620	RING-H2 finger protein ATL8
sly-u.5	101254466	RING-H2 finger protein ATL80
sly-u.5	101262287	RING-H2 finger protein ATL8
sly-u.5	101264584	RING-H2 finger protein ATL8-like
bra-r.6	103853025	RING-H2 finger protein ATL8
bra-r.6	103874124	probable E3 ubiquitin-protein ligase ATL44
vvi-u.5	100260977	RING-H2 finger protein ATL80
vvi-u.5	100266753	RING-H2 finger protein ATL8
ppo-u.5	7485656	RING-H2 finger protein ATL8
ppo-u.5	7471753	RING-H2 finger protein ATL8
mtr-u.5	11428288	RING-H2 finger protein ATL8
mtr-u.5	11405802	RING-H2 finger protein ATL8
mtr-u.5	11411600	RING-H2 finger protein ATL80
ghi-r.1	107917879	RING-H2 finger protein ATL80
ghi-r.1	107922003	RING-H2 finger protein ATL80
bna-r.1	106394440	probable E3 ubiquitin-protein ligase ATL44
bna-r.1	106403202	RING-H2 finger protein ATL8-like
bna-r.1	106348138	probable E3 ubiquitin-protein ligase ATL45
sot-r.1	102604252	RING-H2 finger protein ATL8-like
sot-r.1	102600767	RING-H2 finger protein ATL8-like
sot-r.1	102579592	RING-H2 finger protein ATL80
cit-r.1	102610566	RING-H2 finger protein ATL80
nta-r.1	107828099	RING-H2 finger protein ATL80-like
nta-r.1	107820728	RING-H2 finger protein ATL80-like
nta-r.1	107807258	RING-H2 finger protein ATL8

Top 50 coexpressed genes to 123413266 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123413266 (hvu-r.1 coexpression data)

CoexMap"123409617"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_044958414.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 1, plas 1, vacu 1, mito_plas 1

(predict for XP_044958414.1)

Subcellular
localization
TargetP

other 7

(predict for XP_044958414.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123413266	hvu-r.1 for 123413267	tae-r.2 for 123130802	bdi-r.1 for 100822098	bdi-r.1 for 100845743	osa-u.5 for 9266473	osa-u.5 for 4330352	osa-u.5 for 4336787	zma-u.5 for 100192077	zma-u.5 for 100284205	zma-u.5 for 100283712	sbi-r.1 for 8066387	sbi-r.1 for 8066454	sbi-r.1 for 8076019	ath-u.5 for RHA3A	ath-u.5 for RHA3B	ath-u.5 for AT1G20823	gma-u.5 for 100786769	gma-u.5 for 100787383	gma-u.5 for 100789620	sly-u.5 for 101254466	sly-u.5 for 101262287	sly-u.5 for 101264584	bra-r.6 for 103853025	bra-r.6 for 103874124	vvi-u.5 for 100260977	vvi-u.5 for 100266753	ppo-u.5 for 7485656	ppo-u.5 for 7471753	mtr-u.5 for 11428288	mtr-u.5 for 11405802	mtr-u.5 for 11411600	ghi-r.1 for 107917879	ghi-r.1 for 107922003	bna-r.1 for 106394440	bna-r.1 for 106403202	bna-r.1 for 106348138	sot-r.1 for 102604252	sot-r.1 for 102600767	sot-r.1 for 102579592	cit-r.1 for 102610566	nta-r.1 for 107828099	nta-r.1 for 107820728	nta-r.1 for 107807258

Ortholog

Ortholog ID: 374

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RHA3A

RHA3B

Function^*

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL8

RING-H2 finger protein ATL74

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL80

probable E3 ubiquitin-protein ligase ATL44

uncharacterized LOC100284205

RING-H2 finger protein ATL1R

RING-H2 finger protein ATL74

probable E3 ubiquitin-protein ligase ATL45

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL74

RING-H2 finger A3A

RING-H2 finger A3B

RING/U-box superfamily protein

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8-like

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL8

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL80-like

RING-H2 finger protein ATL8-like

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL80-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	4
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	4
gma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	2
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

123451909

123451912

123141655

123042069

100822098

100829815

9266473

4330352

4336787

100284205

100283712

103641925

8066387

8066454

8060446

816251

829700

838674

100786769

100789620

100813341

101254466

101265820

101248283

103874124

103832100

103845949

100260977

100266753

7471753

7492116

11428288

11405802

11411600

107917879

107922003

106421305

111210253

102600767

102579592

102610566

107807258

107828572

107765274

The preparation time of this page was 0.2 [sec].


Species	hvu	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	1	2	3	3	3	3	3	3	2	2	2	3	2	3	3	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123413266 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123413266 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**