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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123429162   carbon catabolite repressor protein 4 homolog 1-like 
 tae-r.2   123043896   carbon catabolite repressor protein 4 homolog 1 
 tae-r.2   123180866   carbon catabolite repressor protein 4 homolog 1 
 tae-r.2   123118223   carbon catabolite repressor protein 4 homolog 1 
 bdi-r.1   100820928   carbon catabolite repressor protein 4 homolog 1 
 osa-u.5   4331740   carbon catabolite repressor protein 4 homolog 1 
 osa-u.5   4348610   carbon catabolite repressor protein 4 homolog 1 
 zma-u.5   100279626   uncharacterized LOC100279626 
 zma-u.5   100280629   CCR4-NOT transcription complex subunit 6 
 zma-u.5   100279717   uncharacterized LOC100279717 
 sbi-r.1   110429948   carbon catabolite repressor protein 4 homolog 1-like 
 sbi-r.1   8066931   carbon catabolite repressor protein 4 homolog 1 
 ath-u.5   AT3G58560   DNAse I-like superfamily protein 
 ath-u.5   AT3G58580   DNAse I-like superfamily protein 
 gma-u.5   100808935   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100775270   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100819402   carbon catabolite repressor protein 4 homolog 1 
 sly-u.5   101256818   carbon catabolite repressor protein 4 homolog 1 
 sly-u.5   101255473   carbon catabolite repressor protein 4 homolog 1-like 
 bra-r.6   103830166   carbon catabolite repressor protein 4 homolog 1 
 bra-r.6   103862977   carbon catabolite repressor protein 4 homolog 2 
 bra-r.6   103830169   carbon catabolite repressor protein 4 homolog 2 
 vvi-u.5   100265801   carbon catabolite repressor protein 4 homolog 1 
 ppo-u.5   7469907   carbon catabolite repressor protein 4 homolog 1 
 ppo-u.5   7479509   carbon catabolite repressor protein 4 homolog 1 
 mtr-u.5   25483567   carbon catabolite repressor protein 4 homolog 2 
 mtr-u.5   25499554   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107948232   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107889486   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107891241   carbon catabolite repressor protein 4 homolog 1 
 bna-r.1   106432620   carbon catabolite repressor protein 4 homolog 2 
 bna-r.1   106415824   carbon catabolite repressor protein 4 homolog 2 
 bna-r.1   106396318   carbon catabolite repressor protein 4 homolog 2 
 sot-r.1   102601337   carbon catabolite repressor protein 4 homolog 1-like 
 sot-r.1   102598581   carbon catabolite repressor protein 4 homolog 1-like 
 cit-r.1   102615682   carbon catabolite repressor protein 4 homolog 1 
 nta-r.1   107819159   carbon catabolite repressor protein 4 homolog 1-like 
 nta-r.1   107761103   carbon catabolite repressor protein 4 homolog 1 
 nta-r.1   107759403   carbon catabolite repressor protein 4 homolog 1-like 
 cre-r.1   CHLRE_11g475900v5   uncharacterized protein 

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Top 50 coexpressed genes to 123429162 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123429162 (hvu-r.1 coexpression data)

CoexMap"123429162"


hvuLOC123429162 | Entrez gene ID : 123429162    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 2 3 2 2 3 2 3 1 2 2 3 3 2 1 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03018 [list] [network] RNA degradation (115 genes)
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (6 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (31 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5514 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (14 genes)  IEA  
Protein XP_044969161.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 1,  cysk 1,  nucl_plas 1  (predict for XP_044969161.1)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_044969161.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123429162
tae-r.2
for
123043896
tae-r.2
for
123180866
tae-r.2
for
123118223
bdi-r.1
for
100820928
osa-u.5
for
4331740
osa-u.5
for
4348610
zma-u.5
for
100279626
zma-u.5
for
100280629
zma-u.5
for
100279717
sbi-r.1
for
110429948
sbi-r.1
for
8066931
ath-u.5
for
AT3G58560
ath-u.5
for
AT3G58580
gma-u.5
for
100808935
gma-u.5
for
100775270
gma-u.5
for
100819402
sly-u.5
for
101256818
sly-u.5
for
101255473
bra-r.6
for
103830166
bra-r.6
for
103862977
bra-r.6
for
103830169
vvi-u.5
for
100265801
ppo-u.5
for
7469907
ppo-u.5
for
7479509
mtr-u.5
for
25483567
mtr-u.5
for
25499554
ghi-r.1
for
107948232
ghi-r.1
for
107889486
ghi-r.1
for
107891241
bna-r.1
for
106432620
bna-r.1
for
106415824
bna-r.1
for
106396318
sot-r.1
for
102601337
sot-r.1
for
102598581
cit-r.1
for
102615682
nta-r.1
for
107819159
nta-r.1
for
107761103
nta-r.1
for
107759403
cre-r.1
for
CHLRE_11g475900v5


Ortholog ID: 3819
Species hvu tae tae tae bdi osa osa zma zma zma sbi sbi ath ath gma gma gma sly sly bra bra bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta cre
Symbol LOC123429162 LOC123043896 LOC123180866 LOC123118223 LOC100820928 LOC4331740 LOC4348610 LOC100279626 LOC100280629 LOC100279717 LOC110429948 LOC8066931 AT3G58560 AT3G58580 LOC100808935 LOC100775270 LOC100819402 LOC101256818 LOC101255473 LOC103830166 LOC103862977 LOC103830169 LOC100265801 LOC7469907 LOC7479509 LOC25483567 LOC25499554 LOC107891241 LOC107899210 LOC107922222 LOC106418709 LOC106353185 LOC106353187 LOC102601337 LOC102598581 LOC102615682 LOC107819159 LOC107759403 LOC107777079 CHLRE_11g475900v5
Function* carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 uncharacterized LOC100279626 CCR4-NOT transcription complex subunit 6 uncharacterized LOC100279717 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 DNAse I-like superfamily protein DNAse I-like superfamily protein carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma03018 RNA degradation 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03015 mRNA surveillance pathway 3
gma04382 Cornified envelope formation 3
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04120 Ubiquitin mediated proteolysis 2
gma00260 Glycine, serine and threonine metabolism 2
gma00460 Cyanoamino acid metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04144 Endocytosis 3
sly03250 Viral life cycle - HIV-1 2
sly03272 Virion - Hepatitis viruses 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 6
ppo04142 Lysosome 5
ppo05100 Bacterial invasion of epithelial cells 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo03420 Nucleotide excision repair 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03050 Proteasome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03050 Proteasome 3
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 5
sot04120 Ubiquitin mediated proteolysis 3
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03083 Polycomb repressive complex 3
sot04712 Circadian rhythm - plant 3
sot03018 RNA degradation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta00900 Terpenoid backbone biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
cre03040 Spliceosome 2
cre03015 mRNA surveillance pathway 2
cre04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123429162 123043896 123180866 123118223 100820928 4331740 4348610 100279626 100280629 100279717 110429948 8066931 825025 825027 100808935 100775270 100819402 101256818 101255473 103830166 103862977 103830169 100265801 7469907 7479509 25483567 25499554 107891241 107899210 107922222 106418709 106353185 106353187 102601337 102598581 102615682 107819159 107759403 107777079 5727565
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