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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125584278   RNA polymerase sigma factor sigF, chloroplastic-like 
 bna-r.1   106391499   RNA polymerase sigma factor sigF, chloroplastic 
 bna-r.1   125585653   RNA polymerase sigma factor sigF, chloroplastic-like 
 bra-r.6   103865571   RNA polymerase sigma factor sigF, chloroplastic 
 ath-u.5   SIGF   RNApolymerase sigma-subunit F 
 ghi-r.1   121206201   RNA polymerase sigma factor sigF, chloroplastic 
 ghi-r.1   107948374   RNA polymerase sigma factor sigF, chloroplastic 
 ghi-r.1   107899472   RNA polymerase sigma factor sigF, chloroplastic 
 cit-r.1   102608402   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100815699   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100793539   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100782822   RNA polymerase sigma factor sigF, chloroplastic 
 vvi-u.5   100267110   RNA polymerase sigma factor sigF, chloroplastic 
 ppo-u.5   18100169   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.5   11434136   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.5   11432370   RNA polymerase sigma factor sigF, chloroplastic 
 sly-u.5   101267154   RNA polymerase sigma factor sigF, chloroplastic 
 sot-r.1   102599838   RNA polymerase sigma factor sigF, chloroplastic 
 nta-r.1   107807763   RNA polymerase sigma factor sigF, chloroplastic 
 nta-r.1   107790542   RNA polymerase sigma factor sigF, chloroplastic 
 osa-u.5   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 zma-u.5   542484   sigma-like factor 6 
 tae-r.2   123087460   RNA polymerase sigma factor sigF, chloroplastic 
 tae-r.2   123114472   RNA polymerase sigma factor sigF, chloroplastic 
 tae-r.2   123123907   RNA polymerase sigma factor sigF, chloroplastic 
 hvu-r.1   123395233   RNA polymerase sigma factor sigF, chloroplastic 
 sbi-r.1   110431995   RNA polymerase sigma factor sigF, chloroplastic 
 bdi-r.1   100832494   RNA polymerase sigma factor sigF, chloroplastic 

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Top 50 coexpressed genes to 125584278 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125584278 (bna-r.1 coexpression data)

CoexMap"125584278"


bnaLOC125584278 | Entrez gene ID : 125584278    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 3 1 3 1 1 2 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (224 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3791 genes)  IEA  
Protein XP_048608474.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3,  plas 1,  golg_plas 1  (predict for XP_048608474.1)
Subcellular
localization
TargetP
other 7  (predict for XP_048608474.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125584278
bna-r.1
for
106391499
bna-r.1
for
125585653
bra-r.6
for
103865571
ath-u.5
for
SIGF
ghi-r.1
for
121206201
ghi-r.1
for
107948374
ghi-r.1
for
107899472
cit-r.1
for
102608402
gma-u.5
for
100815699
gma-u.5
for
100793539
gma-u.5
for
100782822
vvi-u.5
for
100267110
ppo-u.5
for
18100169
mtr-u.5
for
11434136
mtr-u.5
for
11432370
sly-u.5
for
101267154
sot-r.1
for
102599838
nta-r.1
for
107807763
nta-r.1
for
107790542
osa-u.5
for
4345044
zma-u.5
for
542484
tae-r.2
for
123087460
tae-r.2
for
123114472
tae-r.2
for
123123907
hvu-r.1
for
123395233
sbi-r.1
for
110431995
bdi-r.1
for
100832494


Ortholog ID: 7177
Species bna bna bna bra ath ghi ghi ghi cit gma gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC125584278 LOC106391499 LOC125585653 LOC103865571 SIGF LOC107948374 LOC107899472 LOC107935100 LOC102608402 LOC100815699 LOC100306289 LOC100778636 LOC100267110 LOC18100169 LOC11434136 LOC11432370 LOC101267154 LOC102599838 LOC107807763 LOC107790542 LOC4345044 LOC542484 LOC123087460 LOC123114472 LOC123123907 LOC123395233 LOC110431995 LOC100832494
Function* RNA polymerase sigma factor sigF, chloroplastic-like RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic-like RNA polymerase sigma factor sigF, chloroplastic RNApolymerase sigma-subunit F RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic sigma-like factor 6 RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00860 Porphyrin metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00460 Cyanoamino acid metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125584278 106391499 125585653 103865571 818273 107948374 107899472 107935100 102608402 100815699 100306289 100778636 100267110 18100169 11434136 11432370 101267154 102599838 107807763 107790542 4345044 542484 123087460 123114472 123123907 123395233 110431995 100832494
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