ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	142181159	agamous-like MADS-box protein AGL9 homolog
nta-r.1	107764357	agamous-like MADS-box protein AGL9 homolog
nta-r.1	107773468	agamous-like MADS-box protein AGL9 homolog
ath-u.5	SEP1	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP3	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP2	K-box region and MADS-box transcription factor family protein
gma-u.5	100788427	agamous-like MADS-box protein MADS2
gma-u.5	100794429	agamous-like MADS-box protein MADS4
gma-u.5	100786066	agamous-like MADS-box protein MADS2
bra-r.6	103829078	agamous-like MADS-box protein AGL9 homolog
bra-r.6	103835412	agamous-like MADS-box protein AGL9 homolog
bra-r.6	103839053	agamous-like MADS-box protein AGL9 homolog
vvi-u.5	100251943	agamous-like MADS-box protein MADS2
vvi-u.5	100232936	agamous-like MADS-box protein MADS2
vvi-u.5	MADS4	MADS-box protein 4
ghi-r.1	107909691	agamous-like MADS-box protein MADS2
ghi-r.1	107886377	agamous-like MADS-box protein AGL9 homolog
ghi-r.1	107893809	agamous-like MADS-box protein MADS2
bna-r.1	106372179	developmental protein SEPALLATA 1
bna-r.1	111198100	developmental protein SEPALLATA 3
bna-r.1	106364891	agamous-like MADS-box protein AGL9 homolog
cit-r.1	102611482	agamous-like MADS-box protein MADS2
cit-r.1	102618932	agamous-like MADS-box protein AGL9 homolog
cit-r.1	102620094	agamous-like MADS-box protein MADS2
osa-u.5	4346134	MADS-box transcription factor 7-like
osa-u.5	4347517	MADS-box transcription factor 8-like
zma-u.5	100415938	uncharacterized LOC100415938
zma-u.5	542043	MADS6
zma-u.5	542506	MADS27
tae-r.2	100137001	MADS-box transcription factor 8
tae-r.2	123151806	MADS-box transcription factor 7
tae-r.2	780637	MADS-box transcription factor 7
sbi-r.1	8058971	MADS-box transcription factor 8
sbi-r.1	8060611	MADS-box transcription factor 7
bdi-r.1	100843405	MADS-box transcription factor 8
bdi-r.1	100844294	MADS-box transcription factor 7-like

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(239 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4980 genes)

IEA

GO MF

GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(454 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(1129 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(2091 genes)	IEA

Protein

XP_075109707.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_075109707.1)

Subcellular
localization
TargetP

other 8, mito 4

(predict for XP_075109707.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 142181159	nta-r.1 for 107764357	nta-r.1 for 107773468	ath-u.5 for SEP1	ath-u.5 for SEP3	ath-u.5 for SEP2	gma-u.5 for 100788427	gma-u.5 for 100794429	gma-u.5 for 100786066	bra-r.6 for 103829078	bra-r.6 for 103835412	bra-r.6 for 103839053	vvi-u.5 for 100251943	vvi-u.5 for 100232936	vvi-u.5 for MADS4	ghi-r.1 for 107909691	ghi-r.1 for 107886377	ghi-r.1 for 107893809	bna-r.1 for 106372179	bna-r.1 for 111198100	bna-r.1 for 106364891	cit-r.1 for 102611482	cit-r.1 for 102618932	cit-r.1 for 102620094	osa-u.5 for 4346134	osa-u.5 for 4347517	zma-u.5 for 100415938	zma-u.5 for 542043	zma-u.5 for 542506	tae-r.2 for 100137001	tae-r.2 for 123151806	tae-r.2 for 780637	sbi-r.1 for 8058971	sbi-r.1 for 8060611	bdi-r.1 for 100843405	bdi-r.1 for 100844294

Ortholog

Ortholog ID: 747

Species

nta

sly

ath

gma

bra

vvi

ghi

bna

cit

osa

zma

tae

sbi

bdi

Symbol

LOC142181159

LOC107773468

LOC107820803

TM29

SEP1

SEP3

SEP2

MADS28

MADS4

MADS2

Function^*

agamous-like MADS-box protein AGL9 homolog

MADS-box protein 04g005320

developmental protein SEPALLATA 1-like

K-box region and MADS-box transcription factor family protein

agamous-like MADS-box protein MADS4