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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25480821   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 mtr-r.5   25480821   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 mtr-u.5   11443309   glycogen phosphorylase 1 
 mtr-u.5   25490769   alpha-glucan phosphorylase, H isozyme 
 mtr-u.5   11445705   alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic 
 gma-u.5   100807501   alpha-glucan phosphorylase, H isozyme 
 gma-u.5   100800659   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 gma-u.5   100779066   glycogen phosphorylase 1 
 ppo-u.5   7463047   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 ppo-u.5   18097490   uncharacterized LOC18097490 
 ppo-u.5   7481498   alpha-glucan phosphorylase, H isozyme 
 ath-u.5   PHS1   Glycosyl transferase, family 35 
 ath-u.5   PHS2   alpha-glucan phosphorylase 2 
 bra-r.6   103873279   alpha-glucan phosphorylase 2, cytosolic 
 bra-r.6   103875081   alpha-glucan phosphorylase 1 
 bra-r.6   103854138   alpha-glucan phosphorylase 1 
 vvi-u.5   100264186   uncharacterized LOC100264186 
 vvi-u.5   100257811   alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic 
 vvi-u.5   100245621   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 ghi-r.1   107935941   alpha-glucan phosphorylase, H isozyme 
 ghi-r.1   107943612   alpha-glucan phosphorylase, H isozyme 
 ghi-r.1   107913942   glycogen phosphorylase 1 
 bna-r.1   106410260   alpha-glucan phosphorylase 1 
 bna-r.1   125580538   alpha-glucan phosphorylase 1-like 
 bna-r.1   106382178   alpha-glucan phosphorylase 1-like 
 cit-r.1   102606996   alpha-glucan phosphorylase 2, cytosolic 
 cit-r.1   102625638   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 sly-u.5   101248295   alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic 
 sly-u.5   PHO1a   plastidial alpha-glucan phosphorylase 
 sly-u.5   101261874   uncharacterized LOC101261874 
 sot-r.1   102596766   alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic-like 
 sot-r.1   STP-1   alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like 
 sot-r.1   102578187   glycogen phosphorylase 1-like 
 nta-r.1   107764127   alpha-glucan phosphorylase, H isozyme 
 nta-r.1   107825407   alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic 
 nta-r.1   107819983   alpha-glucan phosphorylase, H isozyme 
 osa-u.5   4324810   alpha-glucan phosphorylase, H isozyme 
 osa-u.5   4334171   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 zma-u.5   pho1   starch phosphorylase1 
 zma-u.5   100285259   uncharacterized LOC100285259 
 tae-r.2   123071433   alpha-glucan phosphorylase, H isozyme-like 
 tae-r.2   543116   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 tae-r.2   123079772   alpha-glucan phosphorylase, H isozyme-like 
 hvu-r.1   123444877   alpha-glucan phosphorylase, H isozyme 
 hvu-r.1   123444878   alpha-glucan phosphorylase, H isozyme-like 
 hvu-r.1   123452312   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 sbi-r.1   8060105   alpha-glucan phosphorylase, H isozyme 
 sbi-r.1   110431626   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 bdi-r.1   100828538   alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 
 bdi-r.1   100827967   alpha-glucan phosphorylase, H isozyme 
 cre-r.1   CHLRE_12g552200v5   uncharacterized protein 
 cre-r.1   CHLRE_07g336950v5   uncharacterized protein 

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Top 50 coexpressed genes to 25480821 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25480821 (mtr-u.5 coexpression data)

CoexMap"25480821"


mtrLOC25480821 | Entrez gene ID : 25480821      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 3 3 2 3 3 3 3 2 3 3 3 2 2 3 3 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00500 [list] [network] Starch and sucrose metabolism (181 genes)
GO BP
GO:0005980 [list] [network] glycogen catabolic process  (7 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4514 genes)  IEA  
GO MF
GO:0008184 [list] [network] glycogen phosphorylase activity  (4 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (97 genes)  IEA  
Protein XP_039690879.1 [sequence] [blastp]
XP_039690880.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690879.1)
chlo 6,  mito 2,  nucl 1  (predict for XP_039690880.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_039690879.1)
chlo 9  (predict for XP_039690880.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25480821
mtr-r.5
for
25480821
mtr-u.5
for
11443309
mtr-u.5
for
25490769
mtr-u.5
for
11445705
gma-u.5
for
100807501
gma-u.5
for
100800659
gma-u.5
for
100779066
ppo-u.5
for
7463047
ppo-u.5
for
18097490
ppo-u.5
for
7481498
ath-u.5
for
PHS1
ath-u.5
for
PHS2
bra-r.6
for
103873279
bra-r.6
for
103875081
bra-r.6
for
103854138
vvi-u.5
for
100264186
vvi-u.5
for
100257811
vvi-u.5
for
100245621
ghi-r.1
for
107935941
ghi-r.1
for
107943612
ghi-r.1
for
107913942
bna-r.1
for
106410260
bna-r.1
for
125580538
bna-r.1
for
106382178
cit-r.1
for
102606996
cit-r.1
for
102625638
sly-u.5
for
101248295
sly-u.5
for
PHO1a
sly-u.5
for
101261874
sot-r.1
for
102596766
sot-r.1
for
STP-1
sot-r.1
for
102578187
nta-r.1
for
107764127
nta-r.1
for
107825407
nta-r.1
for
107819983
osa-u.5
for
4324810
osa-u.5
for
4334171
zma-u.5
for
pho1
zma-u.5
for
100285259
tae-r.2
for
123071433
tae-r.2
for
543116
tae-r.2
for
123079772
hvu-r.1
for
123444877
hvu-r.1
for
123444878
hvu-r.1
for
123452312
sbi-r.1
for
8060105
sbi-r.1
for
110431626
bdi-r.1
for
100828538
bdi-r.1
for
100827967
cre-r.1
for
CHLRE_12g552200v5
cre-r.1
for
CHLRE_07g336950v5


Ortholog ID: 1507
Species mtr mtr mtr gma gma gma ppo ppo ppo ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi cre cre
Symbol LOC25480821 LOC11443309 LOC25490769 LOC100807501 LOC100779066 LOC100789789 LOC7463047 LOC18097490 LOC7481498 PHS1 PHS2 LOC103873279 LOC103875081 LOC103854138 LOC100257811 LOC100245621 LOC100251865 LOC107905809 LOC107893924 LOC107892378 LOC106410260 LOC106347565 LOC106371101 LOC102606996 LOC102625638 LOC101248295 LOC101261874 LOC101244113 STP-1 LOC102578187 LOC102577532 LOC107810306 LOC107783249 LOC107771409 LOC4324810 LOC4334171 pho1 LOC100285259 LOC123079772 LOC123062617 LOC123105082 LOC123444877 LOC123444878 LOC123452312 LOC8060105 LOC110431626 LOC100828538 LOC100827967 CHLRE_12g552200v5 CHLRE_07g336950v5
Function* alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic glycogen phosphorylase 1 alpha-glucan phosphorylase, H isozyme alpha-glucan phosphorylase, H isozyme glycogen phosphorylase 1 alpha-glucan phosphorylase, H isozyme alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic uncharacterized LOC18097490 alpha-glucan phosphorylase, H isozyme Glycosyl transferase, family 35 alpha-glucan phosphorylase 2 alpha-glucan phosphorylase 2, cytosolic alpha-glucan phosphorylase 1 alpha-glucan phosphorylase 1 alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase, H isozyme glycogen phosphorylase 1 alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase 1 alpha-glucan phosphorylase 1 alpha-glucan phosphorylase 2, cytosolic-like alpha-glucan phosphorylase 1 alpha-glucan phosphorylase 2, cytosolic alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic uncharacterized LOC101261874 alpha-glucan phosphorylase, H isozyme alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like glycogen phosphorylase 1-like alpha-glucan phosphorylase type H isozyme alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic uncharacterized LOC107783249 alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase, H isozyme alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic starch phosphorylase1 uncharacterized LOC100285259 alpha-glucan phosphorylase, H isozyme-like alpha-glucan phosphorylase, H isozyme-like alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase, H isozyme alpha-glucan phosphorylase, H isozyme-like alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase, H isozyme alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic alpha-glucan phosphorylase, H isozyme uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 6
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 9
ath00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 3
bra04517 IgSF CAM signaling 3
bra04814 Motor proteins 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi00195 Photosynthesis 2
vvi00730 Thiamine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 5
vvi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 5
vvi00730 Thiamine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi04712 Circadian rhythm - plant 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 9
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 12
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 9
bna00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 6
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00073 Cutin, suberine and wax biosynthesis 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 5
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00730 Thiamine metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 10
sly00520 Amino sugar and nucleotide sugar metabolism 3
sly01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 4
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 11
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 9
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00460 Cyanoamino acid metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 3
nta00270 Cysteine and methionine metabolism 2
nta00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta04142 Lysosome 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 11
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 10
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
zma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 7
zma01240 Biosynthesis of cofactors 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 11
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 19
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 4
hvu00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 13
sbi00520 Amino sugar and nucleotide sugar metabolism 3
sbi01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 7
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 5
cre01230 Biosynthesis of amino acids 4
cre00500 Starch and sucrose metabolism 4
cre00030 Pentose phosphate pathway 4
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 5
cre00500 Starch and sucrose metabolism 5
cre01230 Biosynthesis of amino acids 4
cre00030 Pentose phosphate pathway 4
cre00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25480821 11443309 25490769 100807501 100779066 100789789 7463047 18097490 7481498 822590 823850 103873279 103875081 103854138 100257811 100245621 100251865 107905809 107893924 107892378 106410260 106347565 106371101 102606996 102625638 101248295 101261874 101244113 102603391 102578187 102577532 107810306 107783249 107771409 4324810 4334171 100170240 100285259 123079772 123062617 123105082 123444877 123444878 123452312 8060105 110431626 100828538 100827967 5719681 5725629
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