ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-m.8	4334539	AP-1 complex subunit sigma-1
osa-u.5	4334331	AP-1 complex subunit sigma-1
zma-u.5	100285461	uncharacterized LOC100285461
zma-u.5	100281970	AP-1 complex subunit sigma-2
ath-u.5	AP19	associated protein 19
ath-u.5	AT4G35410	Clathrin adaptor complex small chain family protein
gma-u.5	100306122	clathrin adaptor protein complex small subunit
gma-u.5	100499666	putative AP-1 complex subunit sigma-2
sly-u.5	101260000	AP-1 complex subunit sigma-2
vvi-u.5	100257590	AP-1 complex subunit sigma-1-like
vvi-u.5	100251707	AP-1 complex subunit sigma-2
ppo-u.5	112323480	AP-1 complex subunit sigma-1
ppo-u.5	7464913	AP-1 complex subunit sigma-1
mtr-u.5	11428414	AP-1 complex subunit sigma-1

functional annotation

KEGG

osa04142 [list] [network] Lysosome (74 genes)

GO BP

GO:0006886 [list] [network] intracellular protein transport	(271 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(471 genes)	IEA

GO CC

GO:0030121 [list] [network] AP-1 adaptor complex	(4 genes)	IEA
GO:0030117 [list] [network] membrane coat	(71 genes)	IEA
GO:0043231 [list] [network] intracellular membrane-bounded organelle	(5729 genes)	IEA

GO MF

GO:0035615 [list] [network] clathrin adaptor activity

(6 genes)

IEA

Protein

XP_015630074.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, nucl 1, mito 1, chlo_mito 1

(predict for XP_015630074.1)

Subcellular
localization
TargetP

mito 7, other 3

(predict for XP_015630074.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-m.8 for 4334539	osa-u.5 for 4334331	zma-u.5 for 100285461	zma-u.5 for 100281970	ath-u.5 for AP19	ath-u.5 for AT4G35410	gma-u.5 for 100306122	gma-u.5 for 100499666	sly-u.5 for 101260000	vvi-u.5 for 100257590	vvi-u.5 for 100251707	ppo-u.5 for 112323480	ppo-u.5 for 7464913	mtr-u.5 for 11428414

Ortholog ID: 4678

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

AP19

Function^*

AP-1 complex subunit sigma-1

uncharacterized LOC100285461

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1

associated protein 19

Clathrin adaptor complex small chain family protein

clathrin adaptor protein complex small subunit

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1-like

AP-1 complex subunit sigma-2

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-2-like

AP-1 complex subunit sigma-1

AP-1 complex subunit sigma-1-like

AP-1 complex subunit sigma-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	6
tae04144	Endocytosis	4
tae04145	Phagosome	3
tae04142	Lysosome	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	5
tae04141	Protein processing in endoplasmic reticulum	5
tae00513	Various types of N-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi04144	Endocytosis	3
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	3
ath03060	Protein export	2
ath00513	Various types of N-glycan biosynthesis	2
ath04141	Protein processing in endoplasmic reticulum	2
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma00190	Oxidative phosphorylation	4
gma04142	Lysosome	4
gma04144	Endocytosis	3
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	7
sly04141	Protein processing in endoplasmic reticulum	3
sly00510	N-Glycan biosynthesis	2
sly00513	Various types of N-glycan biosynthesis	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra03060	Protein export	5
bra04141	Protein processing in endoplasmic reticulum	4
bra04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	3
mtr04142	Lysosome	3
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6
bna04145	Phagosome	6
bna04141	Protein processing in endoplasmic reticulum	2
bna04144	Endocytosis	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	4
sot00190	Oxidative phosphorylation	3
sot04145	Phagosome	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	3
nta04142	Lysosome	2
nta04070	Phosphatidylinositol signaling system	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04142	Lysosome	2
nta03050	Proteasome	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	6
cre00190	Oxidative phosphorylation	5
cre04145	Phagosome	5
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

4334331

123105290

123113562

123452549

100833430

100285461

100281970

110431764

816245

829694

100306122

101260000

103845962

103828348

100257590

100251707

112323480

11428414

107929718

106374182

106447197

102603184

102626824

107829888

107769310

5720128

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4334539 (osa-m.8 coexpression data)

Top 50 enrichment test to 4334539 (osa-m.8 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	2	2	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4334539 (osa-m.8 coexpression data)

Top 50 enrichment test to 4334539 (osa-m.8 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**