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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   FHY1   far-red elongated hypocotyl 1 
 ath-r.7   FHY1   far-red elongated hypocotyl 1 
 ath-e.2   FHY1   far-red elongated hypocotyl 1 
 bra-r.6   103867171   protein FAR-RED ELONGATED HYPOCOTYL 1 
 bra-r.6   103865620   protein FAR-RED ELONGATED HYPOCOTYL 1 
 bna-r.1   106454688   protein FAR-RED ELONGATED HYPOCOTYL 1 
 ghi-r.1   121212259   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 ghi-r.1   107943098   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 ghi-r.1   107918439   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 cit-r.1   102612072   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 gma-u.5   100500150   uncharacterized LOC100500150 
 gma-u.5   100795918   protein FAR-RED ELONGATED HYPOCOTYL 1 
 vvi-u.5   100264843   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 ppo-u.5   7468813   probable protein S-acyltransferase 16 
 ppo-u.5   7487264   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 mtr-u.5   25498504   protein FAR-RED ELONGATED HYPOCOTYL 1 
 sly-u.5   101245513   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 sot-r.1   102597420   uncharacterized LOC102597420 
 nta-r.1   107798780   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE 
 nta-r.1   107817999   protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like 

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Top 50 coexpressed genes to FHY1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FHY1 (ath-u.5 coexpression data)

CoexMap"5007942"


athFHY1 | Entrez gene ID : 5007942      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 3 2 1 3 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051457 [list] [network] maintenance of protein location in nucleus  (4 genes)  IMP  
GO:0010018 [list] [network] far-red light signaling pathway  (5 genes)  IMP  
GO:1901000 [list] [network] regulation of response to salt stress  (44 genes)  IMP  
GO:0031048 [list] [network] regulatory ncRNA-mediated heterochromatin formation  (50 genes)  IDA  
GO:0010218 [list] [network] response to far red light  (57 genes)  IDA IGI IMP  
GO:0009646 [list] [network] response to absence of light  (58 genes)  IEP  
GO:0010114 [list] [network] response to red light  (73 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IMP  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IMP  
GO:0009639 [list] [network] response to red or far red light  (221 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM TAS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0061608 [list] [network] nuclear import signal receptor activity  (1 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078018.1 [sequence] [blastp]
NP_001323653.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  extr 2  (predict for NP_001078018.1)
nucl 6,  extr 4  (predict for NP_001323653.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001078018.1)
other 7  (predict for NP_001323653.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
FHY1
ath-r.7
for
FHY1
ath-e.2
for
FHY1
bra-r.6
for
103867171
bra-r.6
for
103865620
bna-r.1
for
106454688
ghi-r.1
for
121212259
ghi-r.1
for
107943098
ghi-r.1
for
107918439
cit-r.1
for
102612072
gma-u.5
for
100500150
gma-u.5
for
100795918
vvi-u.5
for
100264843
ppo-u.5
for
7468813
ppo-u.5
for
7487264
mtr-u.5
for
25498504
sly-u.5
for
101245513
sot-r.1
for
102597420
nta-r.1
for
107798780
nta-r.1
for
107817999


Ortholog ID: 12064
Species ath bra bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta
Symbol FHY1 LOC103867171 LOC103865620 LOC106454688 BNAC04G07710D LOC121212259 LOC107943098 LOC107918439 LOC102612072 LOC100500150 LOC100795918 LOC100264843 LOC7468813 LOC7487264 LOC25498504 LOC101245513 LOC102597420 LOC107798780 LOC107817999
Function* far-red elongated hypocotyl 1 protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE uncharacterized LOC100500150 protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE probable protein S-acyltransferase 16 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein FAR-RED ELONGATED HYPOCOTYL 1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE uncharacterized LOC102597420 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 3
sot04075 Plant hormone signal transduction 2
sot00270 Cysteine and methionine metabolism 2
sot00460 Cyanoamino acid metabolism 2
sot00920 Sulfur metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5007942 103867171 103865620 106454688 106394553 121212259 107943098 107918439 102612072 100500150 100795918 100264843 7468813 7487264 25498504 101245513 102597420 107798780 107817999
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