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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g592400v5   uncharacterized protein 
 ath-u.5   AT1G13030   sphere organelles protein-like protein 
 gma-u.5   100806980   coilin 
 gma-u.5   100776892   coilin 
 sly-u.5   101246716   coilin 
 sly-u.5   101246016   coilin-like 
 osa-u.5   4352003   coilin 
 zma-u.5   100384247   uncharacterized LOC100384247 
 zma-u.5   100280055   uncharacterized LOC100280055 
 vvi-u.5   100256103   coilin 
 ppo-u.5   18102411   coilin 
 ppo-u.5   7469039   coilin 
 mtr-u.5   11427783   coilin 

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Top 50 coexpressed genes to CHLRE_13g592400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g592400v5 (cre-r.1 coexpression data)

CoexMap"5718665"


creCHLRE_13g592400v5 | Entrez gene ID : 5718665      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (16 genes)  IEA  
GO CC
GO:0015030 [list] [network] Cajal body  (1 genes)  IEA  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (5 genes)  IEA  
GO:0030620 [list] [network] U2 snRNA binding  (5 genes)  IEA  
Protein XP_042917762.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042917762.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042917762.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g592400v5

.
ath-u.5
for
AT1G13030

.
gma-u.5
for
100806980

.
gma-u.5
for
100776892

.
sly-u.5
for
101246716

.
sly-u.5
for
101246016

.
osa-u.5
for
4352003

.
zma-u.5
for
100384247

.
zma-u.5
for
100280055

.
vvi-u.5
for
100256103

.
ppo-u.5
for
18102411

.
ppo-u.5
for
7469039

.
mtr-u.5
for
11427783

.


Ortholog ID: 6399
Species ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT1G13030 LOC100806980 LOC100776892 LOC101246016 LOC101246716 LOC4352003 LOC100280055 LOC100384247 LOC103843087 LOC103871964 LOC100256103 LOC18102411 LOC7469039 LOC11427783 LOC123062297 LOC123139527 LOC123447518 LOC107922034 LOC107917465 LOC106401180 LOC106401970 CHLRE_13g592400v5 LOC8070853 LOC102604548 LOC102603469 LOC102620183 LOC100832685 LOC107820583 LOC107809868
Function* sphere organelles protein-like protein coilin coilin coilin-like coilin coilin uncharacterized LOC100280055 uncharacterized LOC100384247 coilin coilin coilin coilin coilin coilin coilin coilin coilin coilin coilin coilin coilin-like uncharacterized protein coilin coilin coilin-like coilin coilin coilin uncharacterized LOC107809868
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03018 RNA degradation 3
zma03015 mRNA surveillance pathway 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03013 Nucleocytoplasmic transport 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03060 Protein export 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
sot03018 RNA degradation 2
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837860 100806980 100776892 101246016 101246716 4352003 100280055 100384247 103843087 103871964 100256103 18102411 7469039 11427783 123062297 123139527 123447518 107922034 107917465 106401180 106401970 5718665 8070853 102604548 102603469 102620183 100832685 107820583 107809868
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